BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0010.p (400 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3158 [R] COG2081 Predicted flavoproteins Rso Ralstonia solana... 496 e-140 PA3949 [R] COG2081 Predicted flavoproteins Pae Pseudomonas aerug... 481 e-135 BMEI0946 [R] COG2081 Predicted flavoproteins Bme Brucella melite... 391 e-108 SMb20319 [R] COG2081 Predicted flavoproteins Sme Sinorhizobium m... 378 e-104 AGl1622 [R] COG2081 Predicted flavoproteins Atu Agrobacterium tu... 369 e-102 >RSc3158 [R] COG2081 Predicted flavoproteins Rso Ralstonia solanacearum Length = 425 Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust. Identities = 256/396 (64%), Positives = 297/396 (75%), Gaps = 13/396 (3%) Query: 1 VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60 V+V+D+MPSAGRKFLLAG GGMNITHSE FL RY RREQ+AP + RF D LR W+ Sbjct: 33 VEVFDSMPSAGRKFLLAGIGGMNITHSEAFDAFLGRYRARREQLAPLIDRFSPDALRDWV 92 Query: 61 HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQ--------ED 112 HGLGIETF+GSSGRVFP +MKAAPLLRAWLHRLREAGV+ HMRHRW GW + Sbjct: 93 HGLGIETFIGSSGRVFPTDMKAAPLLRAWLHRLREAGVKLHMRHRWAGWSAAPSGQADQP 152 Query: 113 GALRFAHPDGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFEL 172 ALRF PDG V ADAVVLA+GG SWPRLGSDG+WVP L+ R V+V PL P+NCGF+ Sbjct: 153 EALRFETPDGERLVHADAVVLAMGGGSWPRLGSDGAWVPRLEARGVQVLPLKPANCGFDA 212 Query: 173 DWSEHFRSRFAGEPVKPVVASTALPSGGV-QNRRGEFIITADGIEGSLVYAMSSALRDTI 231 DWS HFR RFAG+PVK V A G Q R GEF++T GIEGSLVYA+S+ +RD + Sbjct: 213 DWSAHFRERFAGQPVKSVAIGVASGDDGARQFRPGEFLVTQSGIEGSLVYALSAPIRDAL 272 Query: 232 AAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDD 291 A G ++LDL P W ++V L PRGARS+SSHLQS+L++ GVK GLLRE +SKD Sbjct: 273 EAGGEITIWLDLAPGWSAQRVADALMRPRGARSMSSHLQSKLNITGVKLGLLRECLSKDA 332 Query: 292 FADMGKLARAXARAIKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGE 351 FAD+ +L A+AIKALPL + R RPI EAISSAGGV+FEALD LM+ LPGVFCAGE Sbjct: 333 FADLAQL----AQAIKALPLRLTRARPIDEAISSAGGVAFEALDANLMIARLPGVFCAGE 388 Query: 352 MLDWEAPTGGYLLTACFATGRAAAAGALHWLISDDR 387 MLDWEAPTGGYLLTACFA+G AA G L +L + R Sbjct: 389 MLDWEAPTGGYLLTACFASGAAAGHGVLAYLATAAR 424 >PA3949 [R] COG2081 Predicted flavoproteins Pae Pseudomonas aeruginosa Length = 391 Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust. Identities = 246/383 (64%), Positives = 292/383 (76%), Gaps = 9/383 (2%) Query: 1 VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60 +V+DAMPS GRKFLLAG GGMNITH+E + FL RYG R++++A + FDAD LRAWI Sbjct: 13 TEVFDAMPSVGRKFLLAGVGGMNITHAEAREQFLGRYGRRQKEIAALLGEFDADALRAWI 72 Query: 61 HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHP 120 HGLGI+TFVGSSGRVFP +MKAAPLLRAWL RLRE GV H R RWLGW DG L Sbjct: 73 HGLGIDTFVGSSGRVFPSDMKAAPLLRAWLKRLREQGVLIHTRCRWLGWNADGTLDIQSA 132 Query: 121 DGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFELD-WSEHFR 179 ++ADAV+LALGG SW RLGSDG+WVPLL+ R +EV PL PSNCGFE+D WSE FR Sbjct: 133 AERLSIRADAVILALGGGSWQRLGSDGAWVPLLRARGIEVEPLRPSNCGFEIDGWSELFR 192 Query: 180 SRFAGEPVKPVVASTALPSGGVQNRRGEFIITADGIEGSLVYAMSSALRDTIAAEGSARL 239 +F+G PVKPV A G R+GEF++T DGIEGSLVYA+S+A+R+ I A GSA + Sbjct: 193 DKFSGAPVKPVAMGLA----GETPRQGEFVVTRDGIEGSLVYALSAAIRERIEARGSAEV 248 Query: 240 YLDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLA 299 +LDLLP+ E++EA LA PRG+RS+++HL+S+L + GV+AGLLREL + + +L Sbjct: 249 WLDLLPNRRREQIEAALARPRGSRSMANHLRSQLGIDGVRAGLLRELTPAATYTEPARL- 307 Query: 300 RAXARAIKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPT 359 A AIK LPLT+LR RP+ EAISSAGGV FEALD LML LPGVFCAGEMLDWEAPT Sbjct: 308 ---AAAIKRLPLTLLRPRPLDEAISSAGGVRFEALDRNLMLDGLPGVFCAGEMLDWEAPT 364 Query: 360 GGYLLTACFATGRAAAAGALHWL 382 GGYLLTACFA+GR A GAL WL Sbjct: 365 GGYLLTACFASGRVAGLGALAWL 387 >BMEI0946 [R] COG2081 Predicted flavoproteins Bme Brucella melitensis Length = 402 Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/382 (52%), Positives = 261/382 (68%), Gaps = 13/382 (3%) Query: 1 VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60 V +Y+ MP+ GRKF+LAG+ G+NITHSE F RYG R+++ P + F + LR W Sbjct: 29 VTLYEQMPTVGRKFMLAGKSGLNITHSEKFVTFAARYGASRDRILPALDGFGPESLRQWA 88 Query: 61 HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHP 120 LG ETF+GSSGRVFP+ MKA+PLLRAWL RL GV+ RHRW+G+ +DGAL P Sbjct: 89 DDLGAETFIGSSGRVFPKAMKASPLLRAWLKRLEAQGVQILTRHRWIGF-DDGALLIETP 147 Query: 121 DGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRS 180 G V+ D+ + ALGG SWP+LGSD +WV + + +EV+ L P+NCGF++DWS++FR+ Sbjct: 148 AGPARVEYDSALFALGGVSWPKLGSDAAWVAPFKAKGIEVSRLRPANCGFDVDWSDYFRN 207 Query: 181 RFAGEPVKPVVASTALPSGGVQNRRGEFIITADGIEGSLVYAMSSALRDTIAAEGSARLY 240 RFAGEPVK V +TA +GEF+IT GIEGSLVYA S+ALRD + +G A + Sbjct: 208 RFAGEPVKSVAMTTA-----AGTSQGEFVITRIGIEGSLVYAHSAALRDDLEKKGEASII 262 Query: 241 LDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLAR 300 LDL P LE+++++LA G S S+ L+ L GVKA LL E+ + D + Sbjct: 263 LDLAPGRALERLKSDLARQNGKLSFSNLLRKGAGLTGVKAALLWEIQREKDPEKL----- 317 Query: 301 AXARAIKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPTG 360 AR IKALP+ V+R RPI EAISSAGG+ + +D+ MLR +PG+F AGEM+DWEAPTG Sbjct: 318 --ARTIKALPVAVVRPRPIEEAISSAGGICWNEIDNRYMLRKMPGIFVAGEMIDWEAPTG 375 Query: 361 GYLLTACFATGRAAAAGALHWL 382 GYLLTACFA G AAA G + WL Sbjct: 376 GYLLTACFAMGVAAAEGIIDWL 397 >SMb20319 [R] COG2081 Predicted flavoproteins Sme Sinorhizobium meliloti Length = 405 Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/382 (54%), Positives = 259/382 (67%), Gaps = 10/382 (2%) Query: 1 VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60 V VY+AMP+A RKFLLAG+ G+NITHSE DF R+G ++ P + F +R W Sbjct: 29 VTVYEAMPTAARKFLLAGKSGLNITHSEDYRDFATRFGDASARLRPGLDAFTPRDVRVWA 88 Query: 61 HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHP 120 GL ETFVGSSGRVFP+ MKA+PLLRAWL RL GVR RHRW G+ E+G + F P Sbjct: 89 AGLDAETFVGSSGRVFPKAMKASPLLRAWLRRLEAQGVRLLTRHRWSGFAENGYI-FDTP 147 Query: 121 DGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRS 180 +G T V+ DA +LALGGASWPRLGSD +W+PLL+ R V ++ P+NCGF++ WSE FR Sbjct: 148 EGKTVVRCDAALLALGGASWPRLGSDAAWMPLLRARGVPISDFRPANCGFDVAWSEIFRE 207 Query: 181 RFAGEPVKPVVASTALPSGGVQNRRGEFIITADGIEGSLVYAMSSALRDTIAAEGSARLY 240 RFAG+P+K V A++ +G V GEF++T GIEGSLVYA +++LRD + +G+A L Sbjct: 208 RFAGQPLKGVTATS--DAGTVS---GEFVVTRHGIEGSLVYAHAASLRDRLDRDGTAALL 262 Query: 241 LDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLAR 300 LDL P ++ +LA S S+ L+ L VKA LLREL + A Sbjct: 263 LDLTPGRTAGRLARDLARQDRKASFSNRLRKGAGLDPVKAALLRELSPE----AARAAAE 318 Query: 301 AXARAIKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPTG 360 A IKALPL VL TRPIAEAISSAGG+ +A+DD ML+ALPG+F AGEMLDWEAPTG Sbjct: 319 QLAAEIKALPLPVLATRPIAEAISSAGGIRLDAIDDRYMLKALPGLFAAGEMLDWEAPTG 378 Query: 361 GYLLTACFATGRAAAAGALHWL 382 GYLLTAC A GRAAA G WL Sbjct: 379 GYLLTACLAMGRAAARGVEAWL 400 >AGl1622 [R] COG2081 Predicted flavoproteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 451 Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/386 (51%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60 V V++AMP+ RK L+AG+ G+NITH+E F R+G ++ + F + LR W Sbjct: 76 VTVFEAMPTVARKLLMAGKSGLNITHAEDYDSFRHRFGEAEPRLRAALDNFTPEMLRDWA 135 Query: 61 HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHP 120 LG ETFVG+SGRVFPR MKA+PLLRAWL RL GV RHRW G+ D L FA P Sbjct: 136 ERLGQETFVGTSGRVFPRVMKASPLLRAWLARLEAQGVTIQTRHRWTGFSGD-RLVFATP 194 Query: 121 DGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRS 180 G ++ADA +LALGGASWPRLGSD +WVP+L + VEV+P P+NCGF++DWS+ FR Sbjct: 195 GGEVTIKADAALLALGGASWPRLGSDAAWVPVLAQKGVEVSPFRPANCGFDVDWSDIFRE 254 Query: 181 RFAGEPVKPVVASTALPSGGVQNRRGEFIITADGIEGSLVYAMSSALRDTIAAEGSARLY 240 RFAGE VK V T P+G Q GEF+IT GIEGS++YA S+ALRD + G A L Sbjct: 255 RFAGEAVKSTV--TISPAGAFQ---GEFVITKHGIEGSVIYAHSAALRDRLEQAGGAALA 309 Query: 241 LDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLAR 300 +DL P +E++ +L S ++ ++ L VK GLLRE+ F D+ + Sbjct: 310 VDLAPGRTVERLCRDLEKLGRKESFANRMRKAAGLSAVKVGLLREI-----FPDIAAMPD 364 Query: 301 AXARA-IKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPT 359 A +K L + +LR RPIAEAIS+AGGV++ +D+ ML ++PG+F AGEMLDWEAPT Sbjct: 365 GFVAARLKHLEIPLLRPRPIAEAISAAGGVAWSGVDENYMLESIPGIFVAGEMLDWEAPT 424 Query: 360 GGYLLTACFATGRAAAAGALHWLISD 385 GGYLLTACFATG+AAA G WL S Sbjct: 425 GGYLLTACFATGKAAAKGLAGWLESS 450