BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0007.p (308 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0618 Non COG 389 e-108 ZyaiD [L] COG2974 DNA recombination-dependent growth factor C Ec... 234 2e-61 ECs0445 [L] COG2974 DNA recombination-dependent growth factor C ... 234 2e-61 rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco... 233 4e-61 STM0392 [L] COG2974 DNA recombination-dependent growth factor C ... 228 1e-59 >RSc0618 Non COG Length = 307 Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/295 (61%), Positives = 230/295 (77%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNLQ++RLPAPWA+ D++E LAP AF +S++ Q GW PR++ LV+ +NRQ Sbjct: 1 MWFKNLQLHRLPAPWAVAPDQIEKWLAPHAFQPGNSVEKQCSGWASPRDDGALVYSINRQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 +LL EKKLLP++V+NQVTKARA E+EEQQGF GRKQ +ELKEQVTDELLPRAF++ Sbjct: 61 MLLVFRAEKKLLPASVVNQVTKARALEVEEQQGFKLGRKQLRELKEQVTDELLPRAFTIR 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R T VWID NGWL++DA + + ++V LL K+I + PL ++R +SP AAMTDWL S Sbjct: 121 RDTRVWIDTANGWLVIDAAAQALGDDVRGLLVKSIDQLPLASVRVALSPVAAMTDWLLSG 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 EAP GFTVDQD ELRS+ E ATVRYV H LEADD+RRHIEAGKQC RLA+TW +++SFV Sbjct: 181 EAPGGFTVDQDAELRSSGEGGATVRYVGHALEADDMRRHIEAGKQCVRLAMTWDNRISFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGG 295 LT +L++KR+ PLDV+KE ++ +NDDERF+ D LMTGEL ++LT LVD LGG Sbjct: 241 LTPSLTIKRVTPLDVIKEAADPTAQNDDERFESDVALMTGELGRMLTDLVDILGG 295 >ZyaiD [L] COG2974 DNA recombination-dependent growth factor C EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPP--RNNEKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP +++ L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +++I HIEAGK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMTGELAKLLTALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LMTGELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >ECs0445 [L] COG2974 DNA recombination-dependent growth factor C Ecs Escherichia coli O157:H7 Length = 303 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPP--RNNEKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP +++ L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +++I HIEAGK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMTGELAKLLTALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LMTGELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco Escherichia coli K12 Length = 303 Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPP--RNNEKLVHVVN 58 +WFKNL +YRL ++ A+E+E LA AFT C S DM GWVPP +++ L HV N Sbjct: 2 LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61 Query: 59 RQLLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLPRAFS Sbjct: 62 GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVS 238 S A GF + + EL+S E +R + L +++I HIEAGK T+LAL W ++ Sbjct: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMTGELAKLLTALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LMTGELA L+ L++ LGG+ Sbjct: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >STM0392 [L] COG2974 DNA recombination-dependent growth factor C Sty Salmonella typhimurium LT2 Length = 303 Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 176/299 (58%), Gaps = 3/299 (1%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPP--RNNEKLVHVVN 58 +WFKNL +YRL + A+E+E LA FT C S DM GWVPP +++ L H N Sbjct: 2 LWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTAN 61 Query: 59 RQLLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFS 118 Q+++ E+K+LPS VI Q +A+ +LE QG + + LK++V LLPRAFS Sbjct: 62 GQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFS 121 Query: 119 VVRSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLA 178 T +WID VNG ++VD S KAE+ L LL K++ P+ L +T+W+ Sbjct: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWVR 181 Query: 179 SDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVS 238 S GF + + EL++ E +R + L +D+I HIEAGK T+LAL W ++ Sbjct: 182 SGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRIQ 241 Query: 239 FVLTENLSVKRIAPLDVLKEDSEIAGKND-DERFDGDFMLMTGELAKLLTALVDALGGQ 296 FV+ ++ S+KR+ D L++ +E + D +RFD DF+LMTGELA L+ +LV+ LGG+ Sbjct: 242 FVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300