BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0006.p         (114 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1505 Non COG                                                        112   2e-25
RSp1129 [K] COG0640 Predicted transcriptional regulators Rso Ral...   103   8e-23
SMb21576 [K] COG0640 Predicted transcriptional regulators Sme Si...   101   4e-22
AGpA461 [K] COG0640 Predicted transcriptional regulators Atu Agr...   100   6e-22
SMc02647 [K] COG0640 Predicted transcriptional regulators Sme Si...    96   2e-20

>CC1505 Non COG
          Length = 109

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 2/107 (1%)

Query: 10  LGALAQESRLGIFRHLVQVGPEGSAASKIGEALDIAPSSLSFHMKELSHAGLVTSRQEGR 69
           L AL+ E RL IFR LVQ GP G AA +I  AL++ P+SLS ++  LSH+GL+ SR++GR
Sbjct: 2   LSALSHEGRLAIFRLLVQAGPAGVAAGEIARALNVLPNSLSANLNVLSHSGLIASRRDGR 61

Query: 70  FVIYTANYDVMNEVLGFLTENCCGGNP--CSPVSACCPPSVAAIKAK 114
            +IYTA+YD M  +LGFL E+CC G P  C+P+SA     +A   AK
Sbjct: 62  SIIYTADYDAMTGLLGFLMEDCCAGAPQICAPLSAIVSGGMACGAAK 108


>RSp1129 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 107

 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 64/102 (62%)

Query: 1   METKSVIAALGALAQESRLGIFRHLVQVGPEGSAASKIGEALDIAPSSLSFHMKELSHAG 60
           ME    I +L ALA   RL +FR LV  GP G     I E LD+  ++LSFH+KEL +A 
Sbjct: 1   MEETDAIRSLAALAHSLRLRVFRMLVVAGPAGLTPGAIAEQLDVPGATLSFHLKELMNAA 60

Query: 61  LVTSRQEGRFVIYTANYDVMNEVLGFLTENCCGGNPCSPVSA 102
           LVT  ++GR +IY A +D MN +LGFLTENCC G  C   SA
Sbjct: 61  LVTQERDGRHLIYRAAFDHMNGLLGFLTENCCQGEACPEFSA 102


>SMb21576 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 121

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 11/113 (9%)

Query: 1   METKSVIAALGALAQESRLGIFRHLVQVGPEGSAASKIGEALDIAPSSLSFHMKELSHAG 60
           ME +   ++  AL+QE+RLGI R LV  GP G AA  I E + ++PS++SFH+KEL   G
Sbjct: 1   MEERQARSSFAALSQETRLGIVRTLVVAGPVGMAAGAIAEKMGVSPSNVSFHLKELERTG 60

Query: 61  LVTSRQEGRFVIYTANYDVMNEVLGFLTENCCGG-----------NPCSPVSA 102
           L+T R+E R ++Y+A+YD + +++ FL E+CC G           NPC   S+
Sbjct: 61  LITQRRESRSIVYSASYDALADLVKFLMEDCCVGHASVRASLNEQNPCRVASS 113


>AGpA461 [K] COG0640 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 119

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 65/96 (67%)

Query: 1  METKSVIAALGALAQESRLGIFRHLVQVGPEGSAASKIGEALDIAPSSLSFHMKELSHAG 60
          M+ +  + +  AL+QE+RL I R LV  GP+G AA  + E   ++PS++SFH+KEL  AG
Sbjct: 1  MDERQALTSFAALSQETRLHIVRILVVAGPDGMAAGAVAERAKVSPSNVSFHLKELERAG 60

Query: 61 LVTSRQEGRFVIYTANYDVMNEVLGFLTENCCGGNP 96
          L+  ++E R +IYTANY  +  ++ FL E+CC G+P
Sbjct: 61 LIKQKREARSIIYTANYHCLGALIRFLMEDCCAGHP 96


>SMc02647 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 137

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 6/112 (5%)

Query: 1   METKSVIAALGALAQESRLGIFRHLVQVGPEGSAASKIGEALDIAPSSLSFHMKELSHAG 60
           M+T  +IAA  ALAQ +RL  FR LV+  P+G  A +I   L++  +++S H+ +L  AG
Sbjct: 1   MDTVDIIAAFAALAQPTRLDAFRFLVKHEPDGLPAGEIARLLNVPHNTMSTHLAQLQRAG 60

Query: 61  LVTSRQEGRFVIYTANYDVMNEVLGFLTENCCGGNP--CSPVSA----CCPP 106
           LVT+R++ R +IY A+ D +  V+ FL ++CC G+P  C+P+ A    CC P
Sbjct: 61  LVTTRRQSRSIIYRADLDGLRHVVSFLLKDCCAGHPDVCAPLVADLTPCCSP 112