BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0001.p (285 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 233 4e-61 SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing pro... 181 1e-45 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 178 1e-44 BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 178 2e-44 PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 167 2e-41 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 127/249 (51%), Positives = 156/249 (62%), Gaps = 1/249 (0%) Query: 34 IDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVW 93 I++ D R VVA G DY L H HRRAQLL+G G+MQV T D WVVPPQ AVW Sbjct: 6 IEQYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVW 65 Query: 94 IPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPD 153 IP G EH+ RML V+T S ++EP A CQVL V PLLR+LL+ A + Y + Sbjct: 66 IPPGVEHEVRML-GVSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTE 124 Query: 154 SREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSE 213 R+ AL LLL E+A A +P++VPLP E + ALC F+ P IRA WA LH S Sbjct: 125 GRDGALATLLLHELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSL 184 Query: 214 RSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMT 273 RSF R F TG+ F W+ RAC+V A++RLA G +VTAIA D GY+ PA FSTMF+R+ Sbjct: 185 RSFNRTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVL 244 Query: 274 GYVPSSHPA 282 G PS+ A Sbjct: 245 GQPPSAFQA 253 >SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 260 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 142/247 (57%), Gaps = 2/247 (0%) Query: 34 IDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVW 93 ++ +++ PV+A G DYA HSH R QL + G++ V T G W++PP HA+ Sbjct: 10 LEWIEKANAPVLAIGRDYACGLTVPSHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALL 69 Query: 94 IPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPD 153 IP+G EH + M+ V S ++ PE + AR VLE+ L+ L+ E + + Sbjct: 70 IPAGIEHSAEMVSDVRMHSIYISPEAS--EARRPLVLEMSALVGSLIDELVGAGNEASSE 127 Query: 154 SREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSE 213 RE +M LLL EI R + P+ +P P++ KL ALCR F+ +PS A WA ++ +S Sbjct: 128 RRESLMMELLLTEIPRLNQRPLGLPFPRDRKLAALCRQFLEAPSASANIDAWAARMGISR 187 Query: 214 RSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMT 273 RSFTR F +TG+ F WR ACI ++ R+A G +T +A D GYE A F+TMF+RM Sbjct: 188 RSFTRLFRQETGVSFVTWRQHACIFASLPRIADGEPITTVALDAGYENVAAFTTMFRRML 247 Query: 274 GYVPSSH 280 G PS + Sbjct: 248 GAPPSVY 254 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 137/244 (56%) Query: 37 VDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPS 96 ++ +A P VA +Y H HRR+QLL L G++ V T+ G W+VPP HA+WIP+ Sbjct: 26 LEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAMWIPA 85 Query: 97 GREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPDSRE 156 G EH ML V+ S +V P P +V+ V L+ L++E+ ++ + R Sbjct: 86 GIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRG 145 Query: 157 EALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSERSF 216 +M LLL EI E P+ +P P + +L ALCR F+ +PS A EWA+ MS RSF Sbjct: 146 GLIMKLLLHEIPTLPERPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSF 205 Query: 217 TRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMTGYV 276 TR F QTG+ WR +AC+ A+ RLA G +T +A DLGY+ F TMFKRM G Sbjct: 206 TRAFQRQTGLSLSTWRQQACLFAALPRLADGEPITRVALDLGYDSVPAFITMFKRMLGSS 265 Query: 277 PSSH 280 P + Sbjct: 266 PRGY 269 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 141/244 (57%) Query: 34 IDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVW 93 I ++ + P +A Y HSH RAQLL G++ V T G W++P HA+W Sbjct: 36 IAMLESMTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMW 95 Query: 94 IPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPD 153 IP+G EH +L V S ++ + V+ + L+R L+I+AT D AP+ Sbjct: 96 IPAGVEHSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPE 155 Query: 154 SREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSE 213 SR+ ++ L+L+++ E P+ +P P + +L LCRDF++ PS RA EWA+++ MS Sbjct: 156 SRDGLVIELILRDLHTLPEYPLGLPFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSR 215 Query: 214 RSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMT 273 RSFTR F +TG+ WR +AC+ A+ RL+ G VT++A DLGY+ + F+TMF+RM Sbjct: 216 RSFTRHFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRML 275 Query: 274 GYVP 277 G P Sbjct: 276 GVPP 279 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 133/237 (56%) Query: 42 RPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPSGREHQ 101 RPV A DY H H RAQL+ L G++ V T +G WVVPP VW+P+G EH Sbjct: 9 RPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAGIEHA 68 Query: 102 SRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPDSREEALMH 161 R V + F+ P+ R C+V++V PLLR+L++ A RI P Y P R+E +M Sbjct: 69 LRFAGQVRMRTLFIAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDERVME 128 Query: 162 LLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSERSFTRRFL 221 L+L E+ + ++VP P + +L ALCR P+ + A +L +S R+ TR F Sbjct: 129 LILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLTRAFQ 188 Query: 222 AQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMTGYVPS 278 +TG+ F QW R ++ ++ LA GHS+ +A DLGY+ + FS MF+R G PS Sbjct: 189 RETGLSFVQWLRRMRLLASLDALAAGHSILEVALDLGYDSQSAFSAMFRRTLGVSPS 245