BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0206.p         (285 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0448_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Rso...   181   1e-45
RSc0448_1 [S] COG2904 Uncharacterized protein conserved in bacte...   164   2e-40
ECs3654_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Ecs...   151   2e-36
yqcD_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Eco Es...   150   3e-36
HI1291_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Hin ...   149   8e-36

>RSc0448_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Rso Ralstonia
           solanacearum
          Length = 145

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 109/150 (72%), Gaps = 11/150 (7%)

Query: 142 GQMQFGELSGLLLDRLDVEIEPATGAAHPDGSLLRANTDEATVEETLVSHLLKSNCPVTS 201
            + + GEL+GL LDRLDVE    T    P   LL A+ DE+ VEE LVSHLLKSNC VT 
Sbjct: 1   ARQKMGELAGLSLDRLDVE----TDVYQPTPGLLHADQDESPVEEVLVSHLLKSNCLVTG 56

Query: 202 QP------APDLGAPIDQERLLKYIIGFREHNEFHEQCVERIFTDILRHCKPQKLAVYAR 255
           QP         +GAPI+QE LLKY+I FREHNEFHEQCVERIF DI R C+P KLAVYAR
Sbjct: 57  QPDWGSVQIRYVGAPINQEGLLKYLISFREHNEFHEQCVERIFMDIQRQCRPVKLAVYAR 116

Query: 256 YTRRGGLDINPWRSNFSSAKPPSQLRNARQ 285
           YTRRGGLDINP+R+NF++   P  LRNARQ
Sbjct: 117 YTRRGGLDINPFRTNFNTPW-PDNLRNARQ 145


>RSc0448_1 [S] COG2904 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 132

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 97/129 (75%), Gaps = 2/129 (1%)

Query: 15  PESSPLGKSSEYPTHYDPSLLFPIPRAPKRAELQISG--TLPFFGVDLWTAYEISWLNLR 72
           PE SPLGK+S Y T YDPSLLFPIPR  KR E+ ++    LPFFG+DLW  YE+SWLNL+
Sbjct: 4   PEHSPLGKASAYKTQYDPSLLFPIPRQAKRDEIGLAAGSALPFFGIDLWNLYELSWLNLK 63

Query: 73  GKPQIAIATFMVPADSPDIIESKSFKLYLNSFNQERLESADQLIDKMRTDLSAAAGASVQ 132
           GKPQ+AI T +VPADSP+I+ESKSFKLYLN+FNQ ++ S++ L   +  DLS A GA VQ
Sbjct: 64  GKPQVAIGTVIVPADSPNIVESKSFKLYLNTFNQTKVASSEALQQLIHHDLSEACGAPVQ 123

Query: 133 VTLTESSQF 141
           V +    +F
Sbjct: 124 VRIVPQEEF 132


>ECs3654_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Ecs Escherichia
           coli O157:H7
          Length = 146

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 94/145 (64%), Gaps = 11/145 (7%)

Query: 147 GELSGLLLDRLDVEIEPATGAAHPDGSLLRANTDEATVEETLVSHLLKSNCPVTSQP--- 203
           G  +G  +D  D+ I+           L  A + E  VEETLVSHLLKSNC +T QP   
Sbjct: 7   GHFNGTCIDDQDITIDNYEFTT---DYLENATSGEKVVEETLVSHLLKSNCLITHQPDWG 63

Query: 204 ---APDLGAPIDQERLLKYIIGFREHNEFHEQCVERIFTDILRHCKPQKLAVYARYTRRG 260
                  G  ID+E+LL+Y++ FR HNEFHEQCVERIF D+LR C+P+KL+VYARYTRRG
Sbjct: 64  SIQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRG 123

Query: 261 GLDINPWRSNFSSAKPPSQLRNARQ 285
           GLDINPWRSN  S   PS  R  RQ
Sbjct: 124 GLDINPWRSN--SDFVPSTTRLVRQ 146


>yqcD_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Eco Escherichia
           coli K12
          Length = 145

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 93/145 (64%), Gaps = 11/145 (7%)

Query: 147 GELSGLLLDRLDVEIEPATGAAHPDGSLLRANTDEATVEETLVSHLLKSNCPVTSQP--- 203
           G  +G  +D  D+ I+           L  A   E  VEETLVSHLLKSNC +T QP   
Sbjct: 6   GHFNGTCIDDQDITIDNYEFTT---DYLENATCGEKVVEETLVSHLLKSNCLITHQPDWG 62

Query: 204 ---APDLGAPIDQERLLKYIIGFREHNEFHEQCVERIFTDILRHCKPQKLAVYARYTRRG 260
                  G  ID+E+LL+Y++ FR HNEFHEQCVERIF D+LR C+P+KL+VYARYTRRG
Sbjct: 63  SLQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRG 122

Query: 261 GLDINPWRSNFSSAKPPSQLRNARQ 285
           GLDINPWRSN  S   PS  R  RQ
Sbjct: 123 GLDINPWRSN--SDFVPSTTRLVRQ 145


>HI1291_2 [R] COG0780 Enzyme related to GTP cyclohydrolase I Hin Haemophilus
           influenzae
          Length = 144

 Score =  149 bits (376), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 97/147 (65%), Gaps = 12/147 (8%)

Query: 145 QFGELSGLLLDRLDVEIEPATGAAHPDGSLLRANTDEATVEETLVSHLLKSNCPVTSQP- 203
           +   L G  +D  D+EI      A    + L+    +  VEE LVSHLLKSNC +T+QP 
Sbjct: 4   KIDHLQGDCIDEQDIEITSYEFNA----NWLKDCVSDEIVEEKLVSHLLKSNCLITNQPD 59

Query: 204 -----APDLGAPIDQERLLKYIIGFREHNEFHEQCVERIFTDILRHCKPQKLAVYARYTR 258
                   +G  I+QE+LL+Y++ FR+HNEFHEQCVERIF D++ + KP+KL VYARYTR
Sbjct: 60  WGTLHIHYVGKKINQEKLLRYVVSFRQHNEFHEQCVERIFCDLMHYAKPEKLTVYARYTR 119

Query: 259 RGGLDINPWRSNFSSAKPPSQLRNARQ 285
           RGGLDINP+RSNF +   P  LR ARQ
Sbjct: 120 RGGLDINPFRSNFENL--PENLRLARQ 144