BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0200.p         (194 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0399 [L] COG0266 Formamidopyrimidine-DNA glycosylase Rso Rals...   224   9e-59
PA0357 [L] COG0266 Formamidopyrimidine-DNA glycosylase Pae Pseud...   189   4e-48
XF0170 [L] COG0266 Formamidopyrimidine-DNA glycosylase Xfa Xylel...   166   3e-41
XF0071 [L] COG0266 Formamidopyrimidine-DNA glycosylase Xfa Xylel...   166   3e-41
mutM [L] COG0266 Formamidopyrimidine-DNA glycosylase Eco Escheri...   164   2e-40

>RSc0399 [L] COG0266 Formamidopyrimidine-DNA glycosylase Rso Ralstonia
           solanacearum
          Length = 288

 Score =  224 bits (571), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 127/167 (76%)

Query: 28  DPRRFGAILWHDLSDGDIEEHLLLRSLGLEPLEDKFSARELFNQTRGRSAPIKQVLLAGD 87
           DPRRFGA+LWHD  +  +  H LLR+LG+EP + +F    ++ +TRGRSA IK VLLAGD
Sbjct: 122 DPRRFGAVLWHDGDEAALSAHPLLRNLGIEPFDTRFDGDWMYARTRGRSAAIKTVLLAGD 181

Query: 88  IVVGVGNIYASESLFKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIA 147
           IVVGVGNIY SESLF+A I P T A +IS  RY  LAEAIR TLA AI +GGSTLRDF+ 
Sbjct: 182 IVVGVGNIYCSESLFRAGIRPTTAAGRISRPRYAALAEAIRATLADAIARGGSTLRDFVG 241

Query: 148 VNGQSGYFQQNYFVYNRTGEPCRICAAPIRQIKQGQRSTFYCVSCQK 194
            +GQSGYFQ +  VY+R G PCR+C  PIRQI QGQRSTFYC +CQ+
Sbjct: 242 SDGQSGYFQLDALVYDRAGLPCRVCGTPIRQIVQGQRSTFYCPACQR 288


>PA0357 [L] COG0266 Formamidopyrimidine-DNA glycosylase Pae Pseudomonas
           aeruginosa
          Length = 270

 Score =  189 bits (479), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 118/167 (70%), Gaps = 4/167 (2%)

Query: 28  DPRRFGAILWHDLSDGDIEEHLLLRSLGLEPLEDKFSARELFNQTRGRSAPIKQVLLAGD 87
           DPRRFGA+LW         EH LLR+LG EPL D F+ + LF  +RGRS  +K  ++   
Sbjct: 108 DPRRFGAMLWSLAP----LEHELLRNLGPEPLTDAFAGQRLFELSRGRSMAVKPFIMDNA 163

Query: 88  IVVGVGNIYASESLFKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIA 147
           +VVGVGNIYASE+LF A I+P+ PA  IS ARY RLAE I+  LA AIE+GG+TLRDF+ 
Sbjct: 164 VVVGVGNIYASEALFAAGIDPRKPAGSISKARYLRLAEEIKRILAIAIERGGTTLRDFVG 223

Query: 148 VNGQSGYFQQNYFVYNRTGEPCRICAAPIRQIKQGQRSTFYCVSCQK 194
            +GQ GYFQQ  FVY R GE C++C + +R+I+ GQR++ YC  CQ+
Sbjct: 224 GDGQPGYFQQELFVYGRGGEFCKVCGSTLREIRLGQRASVYCPRCQR 270


>XF0170 [L] COG0266 Formamidopyrimidine-DNA glycosylase Xfa Xylella
           fastidiosa 9a5c
          Length = 271

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 4/166 (2%)

Query: 28  DPRRFGAILWHDLSDGDIEEHLLLRSLGLEPLEDKFSARELFNQTRGRSAPIKQVLLAGD 87
           DPRRFG +LW +  DG I  H LL+ LG EPL D F+   L+  +R R+  +K  L+   
Sbjct: 109 DPRRFGCLLWQE--DGQI--HPLLQRLGCEPLSDSFNGDYLYQCSRARNVSVKTFLMDQR 164

Query: 88  IVVGVGNIYASESLFKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIA 147
           IVVGVGNIYA+ESLF+A I+P   A KISL RY RLAE +++ L  AI +GG+TLRDF++
Sbjct: 165 IVVGVGNIYAAESLFRAGISPLCEADKISLQRYRRLAEVVKDILLYAINRGGTTLRDFLS 224

Query: 148 VNGQSGYFQQNYFVYNRTGEPCRICAAPIRQIKQGQRSTFYCVSCQ 193
            +G+ GYF+Q  FVY R  +PC+ C + +RQ    QR+T +C  CQ
Sbjct: 225 PDGRPGYFKQELFVYGRQQQPCKQCGSLLRQTTIRQRTTVWCGHCQ 270


>XF0071 [L] COG0266 Formamidopyrimidine-DNA glycosylase Xfa Xylella
           fastidiosa 9a5c
          Length = 271

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 4/166 (2%)

Query: 28  DPRRFGAILWHDLSDGDIEEHLLLRSLGLEPLEDKFSARELFNQTRGRSAPIKQVLLAGD 87
           DPRRFG +LW +  DG I  H LL+ LG EPL D F+   L+  +R R+  +K  L+   
Sbjct: 109 DPRRFGCLLWQE--DGQI--HPLLQRLGCEPLSDSFNGDYLYQCSRARNVSVKTFLMDQR 164

Query: 88  IVVGVGNIYASESLFKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIA 147
           IVVGVGNIYA+ESLF+A I+P   A KISL RY RLAE +++ L  AI +GG+TLRDF++
Sbjct: 165 IVVGVGNIYAAESLFRAGISPLCEADKISLQRYRRLAEVVKDILLYAINRGGTTLRDFLS 224

Query: 148 VNGQSGYFQQNYFVYNRTGEPCRICAAPIRQIKQGQRSTFYCVSCQ 193
            +G+ GYF+Q  FVY R  +PC+ C + +RQ    QR+T +C  CQ
Sbjct: 225 PDGRPGYFKQELFVYGRQQQPCKQCGSLLRQTTIRQRTTVWCGHCQ 270


>mutM [L] COG0266 Formamidopyrimidine-DNA glycosylase Eco Escherichia
           coli K12
          Length = 269

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 103/167 (61%), Gaps = 4/167 (2%)

Query: 28  DPRRFGAILWHDLSDGDIEEHLLLRSLGLEPLEDKFSARELFNQTRGRSAPIKQVLLAGD 87
           DPRRFGA LW      ++E H +L  LG EPL D F+   L  +   +   IK  L+   
Sbjct: 107 DPRRFGAWLW----TKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNK 162

Query: 88  IVVGVGNIYASESLFKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIA 147
           +VVGVGNIYASESLF A I+P   A  +SLA  E LA  I+  L  +IEQGG+TL+DF+ 
Sbjct: 163 LVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQ 222

Query: 148 VNGQSGYFQQNYFVYNRTGEPCRICAAPIRQIKQGQRSTFYCVSCQK 194
            +G+ GYF Q   VY R GEPCR+C  PI   K  QR+TFYC  CQK
Sbjct: 223 SDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK 269