BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0197.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0397 Non COG                                                        99   4e-21
STM1778 [M] COG3017 Outer membrane lipoprotein involved in outer...    63   3e-10
hemM [M] COG3017 Outer membrane lipoprotein involved in outer me...    63   4e-10
ZhemM [M] COG3017 Outer membrane lipoprotein involved in outer m...    63   4e-10
ECs1714 [M] COG3017 Outer membrane lipoprotein involved in outer...    63   4e-10

>RSc0397 Non COG
          Length = 209

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 14/176 (7%)

Query: 9   DTTAPAYQSSIEIDGRISVQYEQDDRPQSLHGSFFWKQTAQELNLEMFSPLGQTVATINV 68
           D T   YQ      GR S +Y QDD  QS  GSF W++   ++ LE+ SPLGQT+A ++ 
Sbjct: 41  DATITRYQ------GRFSARYVQDDAQQSAVGSFLWRERGADVQLELMSPLGQTLAIVSQ 94

Query: 69  KPGIATLVQSGRAPQVAADVDALAAQSLGWPLPVSGMRQWLQGSGIDAIGKPF-VAKAGE 127
               ATL    + P+ AA+VD L   +LG+ LPVSG+R WL+       G P  VA+  +
Sbjct: 95  NRQGATLELPNQPPRRAAEVDTLMQDALGFSLPVSGLRDWLRARPTP--GTPARVARDAQ 152

Query: 128 NDASFTTRDGWRVTYANWENDA--ASGQTRPKRIDLTRSTTQAGK---VAIRIAID 178
           +      ++GW V Y  W +D   ++   R +R+DL R     G    +++R+ +D
Sbjct: 153 SRPETIEQNGWTVHYVAWSDDGDNSTANARVRRLDLDRPQGAGGAPGPLSVRLVLD 208


>STM1778 [M] COG3017 Outer membrane lipoprotein involved in outer membrane
           biogenesis Sty Salmonella typhimurium LT2
          Length = 207

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 24  RISVQYEQDDRPQSLHGSFFWKQTAQE-LNLEMFSPLGQTVATINVKPGIATLVQSGRAP 82
           R +  Y  DD  Q ++  FFW+QT Q+   L + +PLG T   +N +PG   LV +    
Sbjct: 55  RGAFAYISDD--QKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQR 112

Query: 83  QVAADVDALAAQSLGWPLPVSGMRQWLQGSGIDAIGKPFVAKAGENDASFTTRDG--WRV 140
             A D + +  +  G P+P++ +RQW+ G   DA       +   ++ ++  +DG  W+V
Sbjct: 113 YTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEVNY-RQDGKNWKV 171

Query: 141 TYANWENDAASGQTRPKRIDLTRSTTQAGKVAIRIAIDGW 180
            Y  +  D+ +    P  ++L+      G   I++ +D W
Sbjct: 172 VYGGY--DSKTQPAMPANMELS-----DGSQRIKLKMDNW 204


>hemM [M] COG3017 Outer membrane lipoprotein involved in outer membrane
           biogenesis Eco Escherichia coli K12
          Length = 207

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 36  QSLHGSFFWKQTAQE-LNLEMFSPLGQTVATINVKPGIATLVQSGRAPQVAADVDALAAQ 94
           Q ++  FFW+QT Q+   L + +PLG T   +N +PG   LV +      A D + +  +
Sbjct: 65  QKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGK 124

Query: 95  SLGWPLPVSGMRQWLQGSGIDAIGKPFVAKAGENDASFTTR-DGWRVTYANWENDAASGQ 153
             G P+P++ +RQW+ G   DA       +   ++ +++     W+V Y  +  D  +  
Sbjct: 125 LTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGY--DTKTQP 182

Query: 154 TRPKRIDLTRSTTQAGKVAIRIAIDGW 180
             P  ++LT      G   I++ +D W
Sbjct: 183 AMPANMELT-----DGGQRIKLKMDNW 204


>ZhemM [M] COG3017 Outer membrane lipoprotein involved in outer membrane
           biogenesis EcZ Escherichia coli O157:H7 EDL933
          Length = 207

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 36  QSLHGSFFWKQTAQE-LNLEMFSPLGQTVATINVKPGIATLVQSGRAPQVAADVDALAAQ 94
           Q ++  FFW+QT Q+   L + +PLG T   +N +PG   LV +      A D + +  +
Sbjct: 65  QKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGK 124

Query: 95  SLGWPLPVSGMRQWLQGSGIDAIGKPFVAKAGENDASFTTR-DGWRVTYANWENDAASGQ 153
             G P+P++ +RQW+ G   DA       +   ++ +++     W+V Y  +  D  +  
Sbjct: 125 LTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGY--DTKTQP 182

Query: 154 TRPKRIDLTRSTTQAGKVAIRIAIDGW 180
             P  ++LT      G   I++ +D W
Sbjct: 183 AMPANMELT-----DGGQRIKLKMDNW 204


>ECs1714 [M] COG3017 Outer membrane lipoprotein involved in outer membrane
           biogenesis Ecs Escherichia coli O157:H7
          Length = 207

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 36  QSLHGSFFWKQTAQE-LNLEMFSPLGQTVATINVKPGIATLVQSGRAPQVAADVDALAAQ 94
           Q ++  FFW+QT Q+   L + +PLG T   +N +PG   LV +      A D + +  +
Sbjct: 65  QKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGK 124

Query: 95  SLGWPLPVSGMRQWLQGSGIDAIGKPFVAKAGENDASFTTR-DGWRVTYANWENDAASGQ 153
             G P+P++ +RQW+ G   DA       +   ++ +++     W+V Y  +  D  +  
Sbjct: 125 LTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGY--DTKTQP 182

Query: 154 TRPKRIDLTRSTTQAGKVAIRIAIDGW 180
             P  ++LT      G   I++ +D W
Sbjct: 183 AMPANMELT-----DGGQRIKLKMDNW 204