BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0194.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0394 [J] COG1825 Ribosomal protein L25 (general stress protei...   187   6e-48
NMA1094 [J] COG1825 Ribosomal protein L25 (general stress protei...   137   6e-33
NMB0876 [J] COG1825 Ribosomal protein L25 (general stress protei...   137   8e-33
XF2643 [J] COG1825 Ribosomal protein L25 (general stress protein...   128   4e-30
BMEI0481 [J] COG1825 Ribosomal protein L25 (general stress prote...    96   2e-20

>RSc0394 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Rso
           Ralstonia solanacearum
          Length = 206

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 106/128 (82%)

Query: 1   MKVIAFPRNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSIL 60
           MKV+AF R+ QGTGASRRLR AG+TP I+YG  A P  I +DHNALYHALKKE FHSSIL
Sbjct: 1   MKVVAFERSVQGTGASRRLRNAGKTPAIIYGAGAEPKLIELDHNALYHALKKEAFHSSIL 60

Query: 61  DLEIDGKVEQVLLRDFQVHAFKQLVLHVDFQRVDASQKLHTKVPLHFVNAEISPAVKLHA 120
           D+E+ GKVE+ LLRDFQ+H FKQLVLHVDFQRV A++K+H KVPLHF+N E +P VKL  
Sbjct: 61  DIEVAGKVEKALLRDFQLHPFKQLVLHVDFQRVSATEKIHVKVPLHFLNQETAPGVKLGH 120

Query: 121 GIISHVXD 128
           GI++H+ +
Sbjct: 121 GIVNHILN 128


>NMA1094 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) NmA
           Neisseria meningitidis Z2491
          Length = 190

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 87/117 (74%)

Query: 8   RNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIDGK 67
           R  QGTGASRRLRR GQ PGI+YG    P+ IAVDH  +++AL+KE+FH++++ L ++G+
Sbjct: 10  REAQGTGASRRLRREGQIPGILYGEGQEPVAIAVDHKTVFYALEKESFHTALIKLSLNGE 69

Query: 68  VEQVLLRDFQVHAFKQLVLHVDFQRVDASQKLHTKVPLHFVNAEISPAVKLHAGIIS 124
            + V++RDFQ+H F++ V H+DFQ V A Q +  +VPLH VNAE S AVKL  G +S
Sbjct: 70  TKDVIVRDFQMHPFRREVQHIDFQAVKADQPVRIRVPLHIVNAENSQAVKLQGGRVS 126


>NMB0876 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Nme
           Neisseria meningitidis MC58
          Length = 190

 Score =  137 bits (345), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 87/117 (74%)

Query: 8   RNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIDGK 67
           R  QGTGASRRLRR GQ PGI+YG    P+ IAVDH  +++AL+KE+FH++++ L ++G+
Sbjct: 10  REAQGTGASRRLRREGQIPGILYGEGQEPVAIAVDHKTVFYALEKESFHTALIKLSLNGE 69

Query: 68  VEQVLLRDFQVHAFKQLVLHVDFQRVDASQKLHTKVPLHFVNAEISPAVKLHAGIIS 124
            + V++RDFQ+H F++ V H+DFQ V A Q +  +VPLH VNAE S AVKL  G +S
Sbjct: 70  TKDVIVRDFQMHPFRREVQHIDFQAVKADQLVRIRVPLHIVNAENSQAVKLQGGRVS 126


>XF2643 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Xfa
           Xylella fastidiosa 9a5c
          Length = 208

 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 1/125 (0%)

Query: 2   KVIAFPRNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILD 61
           ++ A  R ++G GASRRLR AG  P I+YGG   P++I ++H  ++ A + E F+SSILD
Sbjct: 5   QIKAQRRKDEGKGASRRLRHAGMIPAIIYGGEQRPVSIQLNHEQIWLAQQNEWFYSSILD 64

Query: 62  LEIDGKV-EQVLLRDFQVHAFKQLVLHVDFQRVDASQKLHTKVPLHFVNAEISPAVKLHA 120
           L +DG   E+VLLRD Q H ++QLV+HVDFQRV +  KL   VPLHF+N   SPA K   
Sbjct: 65  LNVDGGGGEKVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAVPLHFINQATSPAGKASG 124

Query: 121 GIISH 125
            +I+H
Sbjct: 125 VVITH 129


>BMEI0481 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Bme
           Brucella melitensis
          Length = 233

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 65/110 (59%)

Query: 8   RNEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIDGK 67
           R   G G+SR LRR GQ P ++YG    PL IAV +  +++ +    F +++  +E+DGK
Sbjct: 38  RTRVGKGSSRELRRNGQIPAVIYGDKQEPLAIAVSYKEIFYKIHGGGFKTTVATIEVDGK 97

Query: 68  VEQVLLRDFQVHAFKQLVLHVDFQRVDASQKLHTKVPLHFVNAEISPAVK 117
             QVL +D+Q+   +    HVDF RV A   +H  VP+HF N E +P +K
Sbjct: 98  KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIK 147