BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0177.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3080 [R] COG4447 Uncharacterized protein related to plant phot...    75   9e-14

>PA3080 [R] COG4447 Uncharacterized protein related to plant photosystem II
           stability/assembly factor Pae Pseudomonas aeruginosa
          Length = 365

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 7   DQPLFTVYFRDRLHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLHLFAGQG 66
           + PL  ++F D  HG A G +  LL+T DGG+ W  +   +         +L  + A + 
Sbjct: 155 EAPLLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERL---DNEDQFHLNAIAAVKD 211

Query: 67  DALYLAAEQGTLFRSRDGGQHWELQSTGSKASLWSGAVALPSGTLIVAGLGGKLLRSMDE 126
           + L +  E G+LFRS+D G  WE      + SL+       +G ++V GL G L RS D 
Sbjct: 212 NGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGAIGTADAGGVLVYGLRGHLFRSADF 271

Query: 127 GATWQAVALPTSGSITALQATPGVLTASSL------EGKLLQSRDDGLSWQV 172
           G +W+ + L  +        + G L A          G +L+S D G S+ V
Sbjct: 272 GDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLESTDGGRSFSV 323



 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 8   QPLFTVYFRDRLHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLHLFAGQGD 67
           Q L +V+F +   GWA G  + +L ++D G TW      +   +   D+     FA +  
Sbjct: 113 QLLTSVFFVNERKGWAVGHDAQILVSDDAGSTWARQFEDLGREAPLLDI----WFADEQH 168

Query: 68  ALYLAAEQGTLFRSRDGGQHWELQS---TGSKASLWSGAVALPSGTLIVAGLGGKLLRSM 124
            L + A  G L  +RDGGQHWE  S           +   A+    L+V G  G L RS 
Sbjct: 169 GLAVGA-YGALLETRDGGQHWEDVSERLDNEDQFHLNAIAAVKDNGLLVVGEAGSLFRSK 227

Query: 125 DEGATWQAVALPTSGSITAL--QATPGVLTASSLEGKLLQSRDDGLSWQVV 173
           D GATW+ +  P  GS+      A  G +    L G L +S D G SW+ +
Sbjct: 228 DWGATWEKLEGPYEGSLFGAIGTADAGGVLVYGLRGHLFRSADFGDSWEEI 278