BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0147.p (407 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0906 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vib... 226 7e-59 VC1349_1 Non COG 112 1e-24 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 84 7e-16 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 83 1e-15 ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 82 3e-15 >VCA0906 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 578 Score = 226 bits (576), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 110/223 (49%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 50 RYASFQLATELRQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPRPENYGRIYWD 109 RY S+Q A ELRQSSDDLTRL RTYV+T D YEK Y ILDIR+GKKPRPE+Y IYWD Sbjct: 42 RYQSYQAADELRQSSDDLTRLGRTYVVTGDEKYEKMYMDILDIRNGKKPRPESYHTIYWD 101 Query: 110 FVAADGKPPRPDSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTETMAMNMVKGL 169 V G+ P+PD +++AL +M++ GF+D E A L EA+ NSDALV E AMN VKGL Sbjct: 102 LVLQYGQKPKPDG-QTIALQQMMKDLGFSDREFALLKEAQNNSDALVNMEVKAMNAVKGL 160 Query: 170 YEDAQGNFTRRGEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDARTLAQVEDARAH 229 + DA GN+T +GEPD+ A +L+H YH KA+IM P+D+FF L+ RT Q A Sbjct: 161 FPDASGNYTVKGEPDVNMAVQLLHSEEYHREKAKIMAPIDRFFQELETRTAQQFNQAAEQ 220 Query: 230 SATMALIFYALMGVAVVVLACTLMLVYKAIRDPLAHAARVARR 272 + LI + V ++ ++V + I P+ A V +R Sbjct: 221 VKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR 263 >VC1349_1 Non COG Length = 470 Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 150/293 (51%), Gaps = 7/293 (2%) Query: 10 TIRQIFILLTGVISALMLAIALVALALERSDATLNA--ANESRYASFQLATELRQSSDDL 67 +I+ +F+LL +++ +LA+A+ + + +D L + +E + ++L+ EL+QSSD L Sbjct: 3 SIKAMFVLLFCLMA--ILAVAMFKVTRQVADLRLESHQYSEQLFHFYRLSQELKQSSDHL 60 Query: 68 TRLARTYVITADPAYEKQYQAILDIRDGKKPRPENYGRIYWDFVAA-DGKPPRPDSS-RS 125 T+ AR Y T + + + + +L++R+GK P P N +WD V D P+++ R Sbjct: 61 TKFARAYASTGNERWLRMFNQVLNVRNGKLPAPSNNDYEFWDVVVLNDSSELTPNANQRY 120 Query: 126 VALIALMREAGFTDAELAKLSEAKANSDALVKTETMAMNMVKGLYEDAQGNFTRRGEPDL 185 LI +R++G E +L A A SD LV E A VKG + G + GEPDL Sbjct: 121 PTLIERIRQSGIGSVEFLELQNALALSDQLVALEREAFMAVKGWKREFAGEYRYTGEPDL 180 Query: 186 VRARELMHDHAYHVNKARIMRPVDQFFAMLDARTLAQVEDARAHSATMALIFYALMGVAV 245 AR L++ Y + KA+IM + + + R ++V A + + L+ +++ Sbjct: 181 NFARSLLYSEKYFLEKAKIMAAIGSAHSNIVDRIESEVRAADEKAQFYERVNLVLVSLSL 240 Query: 246 VVLACTLMLVYKAIRDPLAHAAR-VARRVAQGDLTAEISHHVRGETGELLEAL 297 +V+ + +L++ PL+ + V R+V D ++ GE +++L Sbjct: 241 LVIIASFILLWVIYIAPLSILLKTVVRQVRSEDYKFTLTQKAYGELQRFIDSL 293 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 15/139 (10%) Query: 220 LAQVEDARAHSATMA-----------LIFYALMGVAVVVLACTL-MLVYKAIRDPLAHAA 267 L V+DA+ H+A + LI AL+ +A C + + ++I PL A Sbjct: 166 LIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAA---GCVMGWYIVRSITRPLDEAV 222 Query: 268 RVARRVAQGDLTAEISHHVRGETGELLEALRSMQTGLQIIVTDVRDGAHRIDNSATEIAA 327 R A +A GDLT I+ + ETG LL+AL +M+T L IV +V++G+ I +A +I A Sbjct: 223 RFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVA 282 Query: 328 GTLDLSTRTEQQASSLEET 346 G DL+ RTE+QASS+EET Sbjct: 283 GNQDLAARTEEQASSVEET 301 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 206 RPVDQFFAMLDARTLAQ-------VEDARAHSATMALIFYALMGVAVVVLACTLMLVYKA 258 R D+++ ++D Q V +A A A + L +A ++ T + + Sbjct: 154 RLQDRYYVLVDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRT 213 Query: 259 IRDPLAHAARVARRVAQGDLTAEISHHVRGETGELLEALRSMQTGLQIIVTDVRDGAHRI 318 I P+ HA +A VAQG+LT + + E G LL AL+ M L IV+ VR G I Sbjct: 214 ITRPINHAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTI 273 Query: 319 DNSATEIAAGTLDLSTRTEQQASSLEETLDGRDHL 353 +++E+A+G +DLS+RTEQQASSLEET + L Sbjct: 274 TRASSEVASGNIDLSSRTEQQASSLEETAAAMEQL 308 >ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 554 Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 3/128 (2%) Query: 229 HSATMALIFYALMGVAVVVLACTLMLVY---KAIRDPLAHAARVARRVAQGDLTAEISHH 285 ++A+ + + L+GV +VVLA + + ++ P+ R +A GDL I Sbjct: 185 NNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVD 244 Query: 286 VRGETGELLEALRSMQTGLQIIVTDVRDGAHRIDNSATEIAAGTLDLSTRTEQQASSLEE 345 E G+L E+LR MQ L V DVR+GA+ I + A+EIA G DLS+RTEQQA+SLEE Sbjct: 245 GSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEE 304 Query: 346 TLDGRDHL 353 T + L Sbjct: 305 TAASMEQL 312