BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0105.p (335 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2247 [E] COG4177 ABC-type branched-chain amino acid transport... 440 e-123 SMb20786 [E] COG4177 ABC-type branched-chain amino acid transpor... 224 2e-58 AGl706 [E] COG4177 ABC-type branched-chain amino acid transport ... 210 5e-54 SMc03117 [E] COG4177 ABC-type branched-chain amino acid transpor... 127 3e-29 AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport... 124 3e-28 >RSc2247 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 341 Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust. Identities = 237/318 (74%), Positives = 267/318 (83%), Gaps = 1/318 (0%) Query: 5 STSTRAAAKPVLRLPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLI 64 S A A+P LP+ RW+PLEI FW +PV +F+ PDYLV SQ++IVGLFA+SLDL+ Sbjct: 10 SVRPEAPARP-HGLPDARWSPLEIAFWCVPVLVFFILPDYLVFGSQVLIVGLFALSLDLV 68 Query: 65 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGAD 124 LGYAGIVSLGHA FFGLGAYTAGLLA HGWGEP++GLV AA VAA+ G VSFLVVRG D Sbjct: 69 LGYAGIVSLGHAGFFGLGAYTAGLLAAHGWGEPLSGLVAAAAVAALTGCCVSFLVVRGQD 128 Query: 125 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL 184 LTRLMVTLGIGLML+EAANK AF+TGGVDGLSG+ M K+ G FEFDL+GR AY YS AVL Sbjct: 129 LTRLMVTLGIGLMLYEAANKMAFLTGGVDGLSGVTMDKLLGSFEFDLSGRTAYVYSLAVL 188 Query: 185 LLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ 244 LFV+LRR+V SPFGL LRGI++G RMPA+GADV RLV FTV+AAVAGVAG LLAQ Sbjct: 189 FGLFVLLRRLVRSPFGLSLRGIQQGPGRMPALGADVRMRLVAAFTVSAAVAGVAGGLLAQ 248 Query: 245 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG 304 TTQFVGLD LGF RSAELLI+LVLGG GRLYG LVGA V+MLAQD L+G+NP YWQFWIG Sbjct: 249 TTQFVGLDALGFSRSAELLIMLVLGGAGRLYGALVGAAVFMLAQDVLAGINPVYWQFWIG 308 Query: 305 LLLIVIVLFARGGLLGGL 322 LLL+ IVLFARGG+LGGL Sbjct: 309 LLLMAIVLFARGGILGGL 326 >SMb20786 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 333 Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/298 (44%), Positives = 190/298 (63%), Gaps = 1/298 (0%) Query: 38 YFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVH-GWGE 96 Y LFP+ L L+++I + L +SLDL+ GY G+ +LGHAA FG GAY AG+ AVH G + Sbjct: 36 YLLFPNNLALLTRITAIALLVLSLDLVTGYCGVATLGHAALFGSGAYAAGIAAVHFGITD 95 Query: 97 PITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLS 156 P+ L + A+AG +++R L +L++++ + + E ANKA+ TGG DGL+ Sbjct: 96 PLLMLAAGILGGALAGLACGVVILRAHGLPQLVLSIALIHLFHEFANKASSWTGGSDGLA 155 Query: 157 GMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNSPFGLGLRGIREGGRRMPAI 216 G+ + G+F FDL GR AY + +L ++FV+LR +V SPFG+ RGIRE R+ A+ Sbjct: 156 GISPDPLIGLFAFDLWGRTAYVFGVVLLAIVFVLLRLVVRSPFGMLCRGIREDPTRIRAM 215 Query: 217 GADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYG 276 GA L+ ++ ++ AVAGV GAL A +TQ VGLD L F SAE L++LVLGGTG L+G Sbjct: 216 GASPTIALLKMYVISGAVAGVGGALNAVSTQVVGLDSLSFTLSAESLVMLVLGGTGSLFG 275 Query: 277 GLVGALVYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFARGGLLGGLAVLRDKFFKGGR 334 L G +V+M +D +S NP +W +G LLI +VLFA GL G +A + + GR Sbjct: 276 ALTGTIVFMFFEDLVSTANPFHWLTMVGALLIAVVLFAPKGLYGTVAEVLARRRGAGR 333 >AGl706 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 335 Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 141/314 (44%), Positives = 197/314 (62%), Gaps = 2/314 (0%) Query: 8 TRAAAKPVLRLPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGY 67 T A P R P R +L + YFLFPD L L+++I+ + L +S+DL+ GY Sbjct: 9 TETAEIPKARSPL-RTLAGPLLIITAAIIGYFLFPDNLALLTRIIAIALLVLSIDLVTGY 67 Query: 68 AGIVSLGHAAFFGLGAYTAGLLAVH-GWGEPITGLVLAAIVAAVAGFLVSFLVVRGADLT 126 G+ +LGHAA FG GAY AG+ A H +P+ V+ A VAG L +++R L Sbjct: 68 CGVATLGHAALFGAGAYAAGIAAAHFEITDPLLMTVIGAAGGGVAGLLSGTVLLRAHGLP 127 Query: 127 RLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLL 186 +L++++ + + EAANKA+ TGG DGLSG+ +FG FEFDL GR AY Y +LLL Sbjct: 128 QLVLSIAVIHLFHEAANKASGWTGGSDGLSGVSPDALFGTFEFDLFGRTAYVYGVCLLLL 187 Query: 187 LFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTT 246 +F+ LR +VNSPFG+ RG+++ R+ A+G VN ++ +F ++ VAG+ GAL A +T Sbjct: 188 VFIALRVVVNSPFGMLCRGVKQDSIRIQAMGGSVNGTVLKMFVISGIVAGIGGALNAIST 247 Query: 247 QFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIGLL 306 Q VGLD L F SAE L++LVLGG G LYG L+G + +M +D +S NP +W +GLL Sbjct: 248 QVVGLDSLSFTLSAEGLVMLVLGGAGSLYGALIGTVTFMWFEDVVSAANPFHWLTIVGLL 307 Query: 307 LIVIVLFARGGLLG 320 LI +VLFA GL G Sbjct: 308 LIAVVLFAPRGLYG 321 >SMc03117 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 330 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 159/293 (54%), Gaps = 16/293 (5%) Query: 33 LPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVH 92 L +A F +P +L+ +I+ LFA + +L+LGY G++S GHAAFFG AY AV Sbjct: 30 LLLAPLFFYPVFLM---KILCFALFACAFNLLLGYTGLLSFGHAAFFGGAAYFTA-HAVK 85 Query: 93 GWG-EPITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGG 151 WG P G++L + AA+ G +V F +R + M+TL + M + +A F T G Sbjct: 86 EWGVPPELGILLGVVGAALLGAVVGFFAIRRQGIYFAMITLALAQMFYFFCLQAGF-TRG 144 Query: 152 VDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNSPFGLGLRGIREGGR 211 DG+ + G + G + + Y + AV ++ ++ R++NSPFG+ L+ IRE Sbjct: 145 EDGIQSVPRGHLLGFIDLSQPTNMYY-FVLAVFVIGIAMIWRIINSPFGMILKSIRENET 203 Query: 212 RMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGT 271 R ++G V + F ++AA+ G+AG L A QF L + + S E++++ +LGG Sbjct: 204 RAISLGYSVRNYKLAAFVMSAALTGLAGGLKALVFQFATLTDVSWQMSGEVILMTLLGGI 263 Query: 272 GRLYGGLVGALVYMLAQDYLSGLNPAYWQFWI----GLLLIVIVLFARGGLLG 320 G L G L GA + + Q+YL A +F + G++ +V VL R G++G Sbjct: 264 GTLIGPLFGAGLVVTLQNYL-----ATSEFPVTIITGIVFMVCVLLFRRGIVG 311 >AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 335 Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 111/327 (33%), Positives = 175/327 (53%), Gaps = 16/327 (4%) Query: 1 MSGTSTSTRAAAKPVLRLPNDRWTPLEILFW----LLPVAAYFLFPDYLVLISQIMIVGL 56 MS + S A A P + T +L +L A F++P +L+ +++ L Sbjct: 1 MSKATHSPTAGAMPQTEVSTTAGTIKTVLILAGLAVLIAAPMFVYPIFLM---KLLCFAL 57 Query: 57 FAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWG-EPITGLVLAAIVAAVAGFLV 115 FA + +L++GY G++S GHAAFFG AY +V WG P GL++ AA+ G ++ Sbjct: 58 FACAFNLLIGYTGLLSFGHAAFFGGAAYFTA-YSVKEWGVTPEIGLIIGMAGAALLGLVI 116 Query: 116 SFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRV 175 F +R + M+TL + M + +A F T G DGL G+ G +FG+ DLN + Sbjct: 117 GFFAIRRQGIYFAMITLALSQMFYFFCLQAPF-THGEDGLQGVPRGHLFGL--LDLNAPL 173 Query: 176 AYGYS-FAVLLLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAV 234 Y+ A +L +V+ R VNSPFG+ L+ IRE +R ++G V R + F ++AA+ Sbjct: 174 NIYYTVLAAFVLALLVIWRFVNSPFGMILKSIRENEQRAISLGYSVQRYKLGAFVMSAAL 233 Query: 235 AGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGL 294 AG+AG L A QF L + + S E++++ +LGG G + G + GA + + Q+YL+ Sbjct: 234 AGLAGGLKALVFQFATLTDVTWQMSGEVILMTLLGGIGTMIGPIFGAGLVVTLQNYLATS 293 Query: 295 N-PAYWQFWIGLLLIVIVLFARGGLLG 320 + P GL+ + VL R GL+G Sbjct: 294 DFPV--TIITGLVFMACVLVFRRGLIG 318