BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0100.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2254 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum 370 e-102 AGl1055GM [I] COG1788 Acyl CoA Atu Agrobacterium tumefaciens str... 260 1e-69 jhp0637 [I] COG1788 Acyl CoA jHp Helicobacter pylori J99 224 2e-58 BS_yxjD [I] COG1788 Acyl CoA Bsu Bacillus subtilis 223 3e-58 HP0691 [I] COG1788 Acyl CoA Hpy Helicobacter pylori 26695 221 8e-58 >RSc2254 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum Length = 229 Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/224 (79%), Positives = 198/224 (88%) Query: 1 VINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDT 60 +INKI S+E A+ADI DGATIMIGGFG AGMP+ALID LIA GAR+LTI+NNNAGNG+T Sbjct: 1 MINKICLSVEAALADIPDGATIMIGGFGTAGMPAALIDGLIAHGARELTIINNNAGNGET 60 Query: 61 GLAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGF 120 GLAALLK +RV+KI+CSFPRQ+DS+VFDALYRAGEIELEL PQGNLAERIRAAGAGIGGF Sbjct: 61 GLAALLKARRVRKIVCSFPRQSDSYVFDALYRAGEIELELVPQGNLAERIRAAGAGIGGF 120 Query: 121 FSPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180 F PT YGT LAEGKETR+IDGK YV E P+ AD+ALIKALRGDRWGNLVYRKTARNFGP+ Sbjct: 121 FCPTAYGTQLAEGKETRIIDGKPYVFELPLTADYALIKALRGDRWGNLVYRKTARNFGPV 180 Query: 181 MAMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224 MAMAAK TIA+V VELG LDPE+I+TPGIFV+RIV A Q Sbjct: 181 MAMAAKCTIAEVDATVELGALDPEHIVTPGIFVKRIVPVGAAAQ 224 >AGl1055GM [I] COG1788 Acyl CoA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 235 Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/223 (56%), Positives = 161/223 (72%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDTG 61 ++K S E+A++ I DGATIMIGGFG +G P LI ALI +G ++LT++NNNAGNG G Sbjct: 1 MDKTIKSAEEALSSIGDGATIMIGGFGGSGAPIELIHALIDKGPKNLTVINNNAGNGRIG 60 Query: 62 LAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGFF 121 +AA++ VKK+ICSFPR +D F Y AGEIELEL PQG LAERIRA GAGI F+ Sbjct: 61 IAAMIDAGMVKKMICSFPRSSDPRAFTDRYLAGEIELELVPQGTLAERIRAGGAGIPAFY 120 Query: 122 SPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIM 181 +PTG+GT LA GK DG+ YV E + ADFA++KA GD +GNL Y K RNF P+M Sbjct: 121 TPTGFGTELANGKVIAEFDGRSYVQERWLKADFAIVKAELGDTYGNLTYNKAGRNFNPLM 180 Query: 182 AMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224 MAAK TIAQV+ +V G++DPE+++TPGIFV +V+ + QQ Sbjct: 181 CMAAKTTIAQVSRIVAAGEIDPEHVVTPGIFVNGVVEIPDPQQ 223 >jhp0637 [I] COG1788 Acyl CoA jHp Helicobacter pylori J99 Length = 232 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 158/223 (70%), Gaps = 2/223 (0%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDTG 61 +NK+ L++A++ + DG TI++GGFG G+P ID + +G +DL +V+NN G D G Sbjct: 1 MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFG 60 Query: 62 LAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGFF 121 L LL+ K++KKII S+ ++ +F++ GEIE+ LTPQG LAE +RA GAGI ++ Sbjct: 61 LGILLEKKQIKKIIASY--VGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYY 118 Query: 122 SPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIM 181 +PTG GT++A+GKE+R +GK Y+LE I D+ LIKA + D GNLV+RKTARNF P+ Sbjct: 119 TPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLC 178 Query: 182 AMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224 AMAAK+ +A+V E+V G+LDP+ I PGI+VQ I + ++ ++ Sbjct: 179 AMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEK 221 >BS_yxjD [I] COG1788 Acyl CoA Bsu Bacillus subtilis Length = 238 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 153/216 (70%), Gaps = 2/216 (0%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDTG 61 + K+ S ++A IHDG T++ GGFG G+P LI ++ +G +DLT+V+NN G D G Sbjct: 1 MGKVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDWG 60 Query: 62 LAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGFF 121 L LL K++KK+I S+ ++ +F+ + +GE+E+EL PQG LAERIRA GAGI GF+ Sbjct: 61 LGLLLANKQIKKMIASYV--GENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFY 118 Query: 122 SPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIM 181 + TG GT +AEGKE + G+ YVLE I D A++KA + D GNL++RKTARNF PI Sbjct: 119 TATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIA 178 Query: 182 AMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIV 217 AMA K+TIA+ E+VE G+LDP++I TPGI+VQ +V Sbjct: 179 AMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVV 214 >HP0691 [I] COG1788 Acyl CoA Hpy Helicobacter pylori 26695 Length = 232 Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 157/223 (70%), Gaps = 2/223 (0%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDTG 61 +NK+ L++A++ + DG TI++GGFG G+P ID + +G +DL +V+NN G D G Sbjct: 1 MNKVITDLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFG 60 Query: 62 LAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGFF 121 L LL+ K++KKII S+ ++ +F++ GEIE+ LTPQG LAE + A GAGI ++ Sbjct: 61 LGILLEKKQIKKIIASY--VGENKIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYY 118 Query: 122 SPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIM 181 +PTG GT++A+GKE+R +GK Y+LE I D+ LIKA + D GNLV+RKTARNF P+ Sbjct: 119 TPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLC 178 Query: 182 AMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224 AMAAK+ +A+V E+V G+LDP+ I PGI+VQ I + ++ ++ Sbjct: 179 AMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEK 221