BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0066.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    98   5e-21
YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersin...    76   1e-14
RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    72   3e-13
RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    72   4e-13
RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    68   5e-12

>RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 89

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 3/86 (3%)

Query: 1  MSKPIIVLGDKTSHGGSVIEGSGQTLVGNKLVARIGDKVSCPRH---GTTTIVSGDPTMV 57
          M++P I+LGDKT HGG VI  SG T  G K +A +GDKV+CP+    GTT IV+GDP +V
Sbjct: 1  MTRPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVV 60

Query: 58 VDGAPVARDGDKTACGAVLIAGQATT 83
          +DG   AR GDKTACGA L+A Q TT
Sbjct: 61 IDGRQAARHGDKTACGATLLASQGTT 86


>YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 101

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%)

Query: 3  KPIIVLGDKTSHGGSVIEGSGQTLVGNKLVARIGDKVSCPRHGTTTIVSGDPTMVVDGAP 62
          K +I +GDKT+HGG V+ GSG+       VAR+ D VSCP+HG T I+   P+   +G P
Sbjct: 15 KGVICIGDKTTHGGQVLSGSGKMKFAGIGVARLNDPVSCPQHGNTFIIEAHPSFKDNGIP 74

Query: 63 VARDGDKTACGAVLIAGQATTTL 85
          VA  G +  CG  LI+ Q   T+
Sbjct: 75 VAFHGHRCGCGCTLISSQKGATV 97


>RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 3  KPIIVLGDKTSHGGSVIE-GSGQTLVGNKLVARIGDKVSCPR--HGTTTIVSGDPTMVVD 59
          + II LGD T HGG VI+  + Q  V    VAR GD+ SCPR  H    I+ GD    VD
Sbjct: 2  RQIIRLGDSTDHGGKVIQTAARQFKVDGVPVARKGDRCSCPREGHQDCVIIEGDEHFKVD 61

Query: 60 GAPVARDGDKTACGAVLIAGQAT 82
          G PVA +G KT+CGA+LIA  AT
Sbjct: 62 GVPVAFEGHKTSCGAMLIATVAT 84


>RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 5  IIVLGDKTSHGGSVIEGSGQTLVGNKL-VARIGDKVSCPR--HGTTTIVSGDPTMVVDGA 61
          II LGD T HGG+V++ S      N + VAR GD+ SCPR  H    I+ GD    VDG 
Sbjct: 4  IIRLGDPTDHGGAVVQTSAPNFKVNGIAVARKGDRCSCPREGHQDCVIIEGDEHFKVDGV 63

Query: 62 PVARDGDKTACGAVLIA 78
          PVA +G +T+CGAVLIA
Sbjct: 64 PVAFEGHRTSCGAVLIA 80


>RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 5  IIVLGDKTSHGGSVIEGSGQTLVGNKL-VARIGDKVSCPR--HGTTTIVSGDPTMVVDGA 61
          +I LGD T HGG+V++ S      N + VAR GD+ SCPR  H    I+ GD    VDG 
Sbjct: 4  VIRLGDPTEHGGAVVQTSAPNFKVNGVAVARKGDRCSCPRKGHQDCVIIEGDEHFKVDGV 63

Query: 62 PVARDGDKTACGAVLIA 78
          P+A +G KT+CGA L A
Sbjct: 64 PIAFEGHKTSCGATLTA 80