BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0052.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0745 [S] COG3157 Hemolysin-coregulated protein (uncharacteriz...   172   3e-43
STM0279 [S] COG3157 Hemolysin-coregulated protein (uncharacteriz...   101   8e-22
STM0276 [S] COG3157 Hemolysin-coregulated protein (uncharacteriz...   100   1e-21
AGl1037 [S] COG3157 Hemolysin-coregulated protein (uncharacteriz...    76   3e-14
STM3131 [S] COG3157 Hemolysin-coregulated protein (uncharacteriz...    71   1e-12

>RSp0745 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Rso
           Ralstonia solanacearum
          Length = 167

 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 108/159 (67%), Gaps = 2/159 (1%)

Query: 4   DVYLQID--GIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVFT 61
           D+Y++ D   IKGES D  HK+WIE  +    ++QP+SATAST GGHTAERCEH+D+VF+
Sbjct: 3   DIYVKFDSPAIKGESQDKDHKEWIEVNSWSQSIIQPRSATASTAGGHTAERCEHRDMVFS 62

Query: 62  KVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVAPSIESGE 121
           K  D+ SPLL Q++S G T  +   EF RADG+G RV+Y E++L N ++S V   + +  
Sbjct: 63  KDLDVVSPLLYQHASGGTTFGEVTIEFFRADGEGNRVKYLEVKLKNAILSEVDSQVAAEG 122

Query: 122 ILNEVVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTN 160
           I  +   L+Y+ V+WKYTQQK  GG  GN+ G W L+ N
Sbjct: 123 IPTDTFSLRYAAVQWKYTQQKSAGGQGGNSQGAWSLTKN 161


>STM0279 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Sty
           Salmonella typhimurium LT2
          Length = 161

 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 6/165 (3%)

Query: 1   MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60
           M+ D++L+IDGI GES DD HK+ IE  +  W + Q  +  A +G G  + +    ++ F
Sbjct: 1   MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLG--SGKVSVTNLSF 58

Query: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVAPS-IES 119
               D ASP L +  SSGK IP+A    MR  G G  + Y +   T+++I+ V+PS  + 
Sbjct: 59  EHYIDRASPNLFKYCSSGKHIPQAIL-VMRKAG-GNPLEYLKYTFTDLIIAMVSPSGSQG 116

Query: 120 GEILN-EVVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI 163
           GEI + E + L +STVK +Y  Q + GG+ G  + G+D   NK I
Sbjct: 117 GEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI 161


>STM0276 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Sty
           Salmonella typhimurium LT2
          Length = 161

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 6/165 (3%)

Query: 1   MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60
           MA D++L+IDGI GES DD HK+ IE  +  W + Q  +  A +G G  + +    ++ F
Sbjct: 1   MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLG--SGKVSVTNLDF 58

Query: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVAPS-IES 119
               D ASP L +  +SGK IP+A    MR  G G  + Y +   T+++++ V+PS    
Sbjct: 59  DHYIDRASPNLFKYCASGKHIPQAIL-VMRKAG-GNPLEYLKYTFTDLIVAVVSPSGSHD 116

Query: 120 GEILN-EVVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI 163
           GEI + E V L +STVK +Y  Q + GG+ G  + G+D   NK I
Sbjct: 117 GEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI 161


>AGl1037 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 158

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 3   IDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVFTK 62
           + +YLQIDGI+G++T + H+ W++ + + W V +  + +A +     A      +++ TK
Sbjct: 1   MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTK 60

Query: 63  VADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVAPSIESGEI 122
           V+D +S  L Q + +G+T   A    +     G    Y E  LTN +I+S +    SG+ 
Sbjct: 61  VSDSSSTKLFQEACAGRTGKLATIHLVTTGNPGN--TYIEYLLTNTLIASYSVD-SSGDR 117

Query: 123 LNEVVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNK 161
             E + L ++ ++ KYT    +          +DL+T K
Sbjct: 118 PVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTK 156


>STM3131 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Sty
           Salmonella typhimurium LT2
          Length = 161

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 5   VYLQIDGIKGESTDDLHKDWIECKT----VDWEVLQPKSATASTGGGHTAERCEHKDIVF 60
           ++L++D IKGES  +  +D IE  +    V  +V    S T  T G     R    ++  
Sbjct: 4   IFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSG-----RAHVGEMSL 58

Query: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVAPSIESG 120
           TK  DLA+P+L +   SG+ I  A     R D  G+        LTNV+IS ++ S  +G
Sbjct: 59  TKFVDLATPVLNEYCCSGRLIRTAVLTLCRND-DGKMRSLIVYTLTNVLISQLSVSGGAG 117

Query: 121 EILNEVVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKV 162
               E + L ++ ++W+ T +K DG    + +  WDL+ N++
Sbjct: 118 GKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQI 159