BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0033.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2932 [O] COG0265 Trypsin-like serine proteases, typically per...    64   6e-11

>RSc2932 [O] COG0265 Trypsin-like serine proteases, typically periplasmic,
           contain C-terminal PDZ domain Rso Ralstonia solanacearum
          Length = 403

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRPPPPKN 60
           +RPGDIL++++ + + DTT +LN IAQL P  +  +TV RK +  +L I VGKRPPP + 
Sbjct: 331 LRPGDILINVNGESIQDTTALLNSIAQLKPSTEAKVTVSRKGKPVELTIMVGKRPPPVRR 390

Query: 61  D 61
           +
Sbjct: 391 N 391