BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0019.p (277 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1982 [L] COG0863 DNA modification methylase Rso Ralstonia sol... 390 e-108 STM3386 [L] COG0863 DNA modification methylase Sty Salmonella ty... 134 2e-31 HP1367 [L] COG0863 DNA modification methylase Hpy Helicobacter p... 132 7e-31 all4411 [L] COG0863 DNA modification methylase Nos Nostoc sp. PC... 130 3e-30 yhdJ [L] COG0863 DNA modification methylase Eco Escherichia coli... 129 7e-30 >RSc1982 [L] COG0863 DNA modification methylase Rso Ralstonia solanacearum Length = 270 Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust. Identities = 179/260 (68%), Positives = 218/260 (83%), Gaps = 3/260 (1%) Query: 14 LDRVFCEDALSATSGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLSWTEQWID 73 +D +F ED ++ G+ R+ DGSVDL+IADPPYGLGKDYGNDSDKL AYL+W+E+WI+ Sbjct: 6 IDGIFNEDCIA---GVGRLADGSVDLVIADPPYGLGKDYGNDSDKLSGEAYLAWSERWIE 62 Query: 74 AALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHDT 133 A LPKL NGSLY+F TW+ +PE+FVMLK+R++MINEIIWDRRVPSMGGSTR++SSVHD Sbjct: 63 AVLPKLARNGSLYLFCTWQYAPELFVMLKRRLSMINEIIWDRRVPSMGGSTRKFSSVHDN 122 Query: 134 IGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHK 193 IGFFA ++DY+FD+DA+RIPYDA+TKKARSR F G KWLE+GYNPKDVWSVSRLHR+ Sbjct: 123 IGFFAASRDYYFDVDAVRIPYDAETKKARSRKRFEGKKWLEVGYNPKDVWSVSRLHRQDP 182 Query: 194 ERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYCE 253 ERA+HPTQKPLE+VERMV ASCPPGG+VLDPF+GSGTTA A R GR F GFE+N +YC Sbjct: 183 ERAEHPTQKPLELVERMVLASCPPGGLVLDPFLGSGTTAAACARLGRRFAGFEINAEYCR 242 Query: 254 LIRQRLDALDAPAPASQDDE 273 + R+R+ A+ P S D + Sbjct: 243 VARERVAAVTPLGPQSTDSQ 262 >STM3386 [L] COG0863 DNA modification methylase Sty Salmonella typhimurium LT2 Length = 294 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 127/241 (52%), Gaps = 12/241 (4%) Query: 25 ATSGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLSWTEQWIDAALPKLKPNGS 84 A + L ++P S+DL+ ADPPY +GKD+ + D A++L+W + ID LK +G+ Sbjct: 22 ALTELKKLPSESIDLIFADPPYNIGKDFDGMVESWDEASFLAWLYECIDECHRVLKKHGT 81 Query: 85 LYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRY-SSVHDTIGFFARA-KD 142 +YI + N P I + + T+ + I+W S G ++Y S+++ I + K Sbjct: 82 MYIMNSTENMPYIDLKCRTLFTIKSRIVWS--YDSSGVQAKKYFGSMYEPILMMVKNPKS 139 Query: 143 YFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYN----PKDVWSVSRLHREHKERADH 198 Y F+ DAI + +T R++ K YN P +VWS R+ E +H Sbjct: 140 YTFNRDAILV----ETTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENH 195 Query: 199 PTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYCELIRQR 258 PTQKP +++R++ AS P VLDPF GS TT A GR F G ELN +Y ++ +R Sbjct: 196 PTQKPSALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRR 255 Query: 259 L 259 L Sbjct: 256 L 256 >HP1367 [L] COG0863 DNA modification methylase Hpy Helicobacter pylori 26695 Length = 260 Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 24/255 (9%) Query: 14 LDRVFCEDALSATSGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLSWTEQWID 73 L++++ ED + L ++ D SVDL I DPPY L K DS K D +L+++ WID Sbjct: 3 LNKIYIEDVFTF---LDKLEDKSVDLAIIDPPYNL-KIASWDSFKND-EEFLTFSYAWID 57 Query: 74 AALPKLKPNGSLYIFLTWRNSPEIFVMLK-QRMTMINEIIWDRRVPSMGGSTRRYSSVHD 132 LPKLK GS YIF T N L +++ +N I W ++ + +RY+ + Sbjct: 58 KMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKK-DGFANAKKRYNHAQE 116 Query: 133 TIGFFA-RAKDYFFDLDAIRIPYDA--QTKKARSRSIFVGAK-WLEMGYNPK-----DVW 183 +I F++ K+Y F+ D IRI Y++ + K A+S+ I K W NPK DVW Sbjct: 117 SILFYSMHKKNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFP---NPKGKLCLDVW 173 Query: 184 SVSRLHREHKERAD-----HPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRC 238 ++ KE+ HP+ KP ++ERM+KAS ++LD F GSG T++ A+ Sbjct: 174 EITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSL 233 Query: 239 GRHFTGFELNPDYCE 253 R+F G E + +Y Sbjct: 234 ERNFIGCESHAEYVH 248 >all4411 [L] COG0863 DNA modification methylase Nos Nostoc sp. PCC 7120 Length = 295 Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 13/249 (5%) Query: 17 VFCEDALSATSGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAA-YLSWTEQWIDAA 75 +F DAL+ S + IP SVDL+ DPPY +GK + N DK ++ Y +W +W+D Sbjct: 12 LFHGDALNILS--SNIPSESVDLIFIDPPYNIGKHFSNFHDKWESEEEYANWAYKWLDEC 69 Query: 76 LPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHDTIG 135 + LK +G++Y+ + + P + L+Q++T+++ I+W + T+ + S+++ I Sbjct: 70 IRVLKSHGTIYVMTSTQAMPYFDIYLRQKLTILSRIVWHYDSSGVQA-TKYFGSMYEPIL 128 Query: 136 FFARAK-DYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYN----PKDVWSVSRLHR 190 + K +Y F+ + I+I + K R + K + YN P +VW SR+ Sbjct: 129 HCVKNKSNYIFNSEEIKI----EAKTGAQRKLIDYRKAVPAPYNTEKVPGNVWYFSRVRY 184 Query: 191 EHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPD 250 E +HP+QKP ++ER++ +S +VLDPF G+ T A A+R GR E + Sbjct: 185 RMPEYENHPSQKPESLIERIILSSSNEDSLVLDPFAGTFTVASVAKRLGRKSISIESQEE 244 Query: 251 YCELIRQRL 259 Y ++ +R+ Sbjct: 245 YLKIGLRRV 253 >yhdJ [L] COG0863 DNA modification methylase Eco Escherichia coli K12 Length = 296 Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 25 ATSGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLSWTEQWIDAALPKLKPNGS 84 A + L +IP SVDL+ ADPPY +GK++ + ++ W + I LK GS Sbjct: 24 ALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGS 83 Query: 85 LYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHDTIGFFAR-AKDY 143 +YI + N P I + ++ T+ + I+W + + + Y S+++ I + AK+Y Sbjct: 84 MYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQ-AKKHYGSMYEPILMMVKDAKNY 142 Query: 144 FFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYN----PKDVWSVSRLHREHKERADHP 199 F+ DAI + + K R++ K YN P +VW R+ E +HP Sbjct: 143 TFNGDAILV----EAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHP 198 Query: 200 TQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYCELIRQRL 259 TQKP +++R++ AS PG +VLDPF GS TT A GR F G E+N +Y ++ +RL Sbjct: 199 TQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRL 258 Query: 260 DA 261 D Sbjct: 259 DV 260