BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0005.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2962 [Q] COG1127 ABC-type transport system involved in resist...   181   4e-46
VC2520 [Q] COG1127 ABC-type transport system involved in resista...   181   6e-46
STM3313 [Q] COG1127 ABC-type transport system involved in resist...   181   7e-46
NMA0485 [Q] COG1127 ABC-type transport system involved in resist...   180   9e-46
YPO3575 [Q] COG1127 ABC-type transport system involved in resist...   180   1e-45

>RSc2962 [Q] COG1127 ABC-type transport system involved in resistance to
           organic solvents, ATPase component Rso Ralstonia
           solanacearum
          Length = 279

 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 112/148 (75%), Gaps = 2/148 (1%)

Query: 5   TNIVEIRDLHFRY--GDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEG 62
           T +VE+  + F Y  G R IL+GL M  P+G VVAVMGGSG GKTT+LRLIGGQ+    G
Sbjct: 7   TAVVELDQVDFAYQPGARRILSGLCMRVPKGSVVAVMGGSGCGKTTVLRLIGGQVAAASG 66

Query: 63  RVEVDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRD 122
            V V G ++ ++    LY  RR+MGMLFQ GALF+DM+VFDNVAFPLREHT+L + LIRD
Sbjct: 67  AVRVHGADIGAMDKPALYAARRQMGMLFQFGALFSDMSVFDNVAFPLREHTELPDLLIRD 126

Query: 123 LVLMKLNAVGLRNAASLKPAEISGGMAR 150
           LVLMKLNAVGLR A  L P++ISGGMAR
Sbjct: 127 LVLMKLNAVGLRGARDLMPSQISGGMAR 154


>VC2520 [Q] COG1127 ABC-type transport system involved in resistance to
           organic solvents, ATPase component Vch Vibrio cholerae
          Length = 267

 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 113/144 (78%)

Query: 5   TNIVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRV 64
           +++V I++L F    R I   + +  P+GKV A+MG SG GKTT+LRLIGGQL P++G +
Sbjct: 4   SDLVTIKNLRFSRSQRVIFDDIDLHVPKGKVTAIMGPSGIGKTTLLRLIGGQLLPEQGEI 63

Query: 65  EVDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLV 124
             DGEN+P+L+ ++LY  R+KM MLFQ+GALFTD+ VFDNVA+PLREHT+LDE +I+ LV
Sbjct: 64  WFDGENIPTLSRRKLYRARKKMSMLFQSGALFTDLNVFDNVAYPLREHTELDEAMIKTLV 123

Query: 125 LMKLNAVGLRNAASLKPAEISGGM 148
           L+KL AVGLR AA L P+E+SGGM
Sbjct: 124 LLKLEAVGLRGAAYLMPSELSGGM 147


>STM3313 [Q] COG1127 ABC-type transport system involved in resistance to
           organic solvents, ATPase component Sty Salmonella
           typhimurium LT2
          Length = 270

 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 112/144 (77%)

Query: 5   TNIVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRV 64
            N+V++RD+ F  G+R I   + +  PRGK+ A+MG SG GKTT+LRLIGGQ+ P +G +
Sbjct: 6   ANLVDMRDVSFSRGERCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIPPDKGEI 65

Query: 65  EVDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLV 124
             DGENVP+++  +LY +R++M MLFQ+GALFTDM VFDNVA+PLREHT+L   L++ +V
Sbjct: 66  LFDGENVPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTNLPAPLLKSVV 125

Query: 125 LMKLNAVGLRNAASLKPAEISGGM 148
           +MKL AVGLR AA L P+E+SGGM
Sbjct: 126 MMKLEAVGLRGAAKLMPSELSGGM 149


>NMA0485 [Q] COG1127 ABC-type transport system involved in resistance to
           organic solvents, ATPase component NmA Neisseria
           meningitidis Z2491
          Length = 286

 Score =  180 bits (457), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 114/146 (78%)

Query: 5   TNIVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRV 64
           +  +E++D+ F YGDRPIL  +    P+G   AVMGGSGSGKTT++RLI GQ++PQ G+V
Sbjct: 24  SPFIEMKDVAFAYGDRPILNDINFSIPQGNFAAVMGGSGSGKTTLMRLITGQIRPQSGKV 83

Query: 65  EVDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLV 124
            ++G ++   +  +LY  RR+MG+LFQ+GALFTD++VFDN+AFP+RE T L E +IRDLV
Sbjct: 84  LIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFDNIAFPMRELTRLPEAVIRDLV 143

Query: 125 LMKLNAVGLRNAASLKPAEISGGMAR 150
           L+KLNAVGLR   +L P+E+SGGM+R
Sbjct: 144 LLKLNAVGLRGVENLMPSELSGGMSR 169


>YPO3575 [Q] COG1127 ABC-type transport system involved in resistance to
           organic solvents, ATPase component Ype Yersinia pestis
          Length = 272

 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/143 (60%), Positives = 111/143 (77%)

Query: 6   NIVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRVE 65
           N++EIR + F  G+R I   + M  PRGKV A+MG SG GKTT+LRLIGGQL P  G + 
Sbjct: 10  NLIEIRGMSFTRGERLIFADINMTVPRGKVTAIMGPSGIGKTTLLRLIGGQLAPDTGEIW 69

Query: 66  VDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVL 125
            DG+N+P+L+ ++LY +R+KM MLFQ+GALFTD+TVF+NVAFPLREH+ L E L+   V+
Sbjct: 70  FDGDNIPALSRQRLYDVRKKMSMLFQSGALFTDLTVFENVAFPLREHSRLPEELLHSTVM 129

Query: 126 MKLNAVGLRNAASLKPAEISGGM 148
           MKL AVGLR AA+L PAE+SGGM
Sbjct: 130 MKLEAVGLRGAANLMPAELSGGM 152