BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0001.p         (246 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2722 [V] COG0732 Restriction endonuclease S subunits Xfa Xylel...   122   7e-28
PA2734 [V] COG0732 Restriction endonuclease S subunits Pae Pseud...    85   2e-16
CC0621 [V] COG0732 Restriction endonuclease S subunits Ccr Caulo...    68   2e-11

>XF2722 [V] COG0732 Restriction endonuclease S subunits Xfa Xylella
           fastidiosa 9a5c
          Length = 468

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 131/249 (52%), Gaps = 12/249 (4%)

Query: 1   LGEVPEHWEVVFIKHVADVRFSGVDKHSHEHETPVRLCNYTDV--YKNDRITGDMDLMRA 58
           LG+VP HW+V  +K    +  S +     E   P     Y D+   +  R+  +++ +R 
Sbjct: 229 LGDVPVHWDVKPLKRWVRLNASTLG----EKTDPDFEFRYVDIGSVQTGRLAKELERIRF 284

Query: 59  TATRAELSRLTLKAGDVILTKDSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLG 118
               +  +R  L+ GD I++        I    +V  +   ++ +    +L P  +    
Sbjct: 285 EVAPSR-ARRVLRRGDTIISTVRTYLKAIW---YVSEEADDLIASTGFAVLTPG-NSAEP 339

Query: 119 EFLFRAISSARTAQQFHVLATGVTRFALSKHDVKNAVIALPP-VEDQRAICRWITDECQP 177
           E+L   I S+    +    + G+   A+++  +    +ALPP V++Q+AI   I  E  P
Sbjct: 340 EYLGYVIQSSAFVNRVAANSIGIAYPAIAETVLGRFPVALPPTVDEQQAIVAHIKTESAP 399

Query: 178 LDDAIARTEDQIKLVREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQEDTL 237
           LDDAI RTE++I L+REYRDRLI DVVTGQVDV GWQ G  D++DDA LAAL D QE+  
Sbjct: 400 LDDAITRTEEEITLIREYRDRLITDVVTGQVDVRGWQPGPEDVVDDAVLAALGDDQEEMT 459

Query: 238 EGEVIDGED 246
           E E  D ED
Sbjct: 460 EQENDDDED 468


>PA2734 [V] COG0732 Restriction endonuclease S subunits Pae Pseudomonas
           aeruginosa
          Length = 431

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 26/252 (10%)

Query: 1   LGEVPEHWEVVFIKHVADVRFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATA 60
           LGEVP HWEV  +K +A                   + + T    +D I   ++ +++  
Sbjct: 200 LGEVPAHWEVKRLKFLAG-----------------NITSQTTTKADDEIYLALEHVQSWT 242

Query: 61  TRAELSRLTLKAGDVILTKDSETADDIGVPAWVP--ADLPGVVCA----YHLCLLRPQPD 114
               ++R      +   T     ADD+      P  A +  VVCA        +LR + +
Sbjct: 243 G---VARPLGGEVEFASTVKRFVADDVLFGKLRPYLAKVTRVVCAGVCVSEFLVLRSRQE 299

Query: 115 RVLGEFLFRAISSARTAQQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDE 174
            +L  +L + +   R          G        + + N  + +P  ++Q AI   I  E
Sbjct: 300 LILPAYLEQLLRCKRVIDLISSSTAGAKMPRADWNFIGNVRLPIPRKDEQEAILSHIGRE 359

Query: 175 CQPLDDAIARTEDQIKLVREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQE 234
            + LD+ IAR ED+IKL+REYRDRLIAD VTGQVD+ GWQ G  D++ D  LAAL D   
Sbjct: 360 TKDLDETIARAEDEIKLIREYRDRLIADAVTGQVDLRGWQPGPDDVVSDDDLAALGDDDA 419

Query: 235 DTLEGEVIDGED 246
            + + E  D ED
Sbjct: 420 GSSDDEEADAED 431


>CC0621 [V] COG0732 Restriction endonuclease S subunits Ccr Caulobacter
           vibrioides
          Length = 450

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 15/218 (6%)

Query: 1   LGEVPEHWEVVFIKHVADV----RFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLM 56
           LG++P HWEVV  K++AD      F              R+     V   D   GD  + 
Sbjct: 234 LGQMPAHWEVVPAKNLADSIKAGPFGSALTKDMYSSAGYRVYGQEQVIPGDFRIGDYYV- 292

Query: 57  RATATRA-ELSRLTLKAGDVILTKDSETADDIGVPAWVPADL-PGVVCAYHLCLLRPQPD 114
             T+ R  ELS+  ++ GD++++         G  A  P    PG++    L   RP  +
Sbjct: 293 --TSDRYNELSQYRVEVGDLLVS----CVGTFGKIAIFPQGAEPGIINP-RLIRFRPN-N 344

Query: 115 RVLGEFLFRAISSARTAQQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDE 174
           +V   +L   + SA + +QF  L+ G T   ++   +   V+ +PP+++Q +I  ++ + 
Sbjct: 345 QVDPTYLCVLLRSAVSFEQFSYLSRGGTMDVINIGILGEIVVPVPPMQEQISIAGYLAEV 404

Query: 175 CQPLDDAIARTEDQIKLVREYRDRLIADVVTGQVDVSG 212
            +  D   A +E  I L++E R  LI+  VTG++DV G
Sbjct: 405 QEQFDSLSAASEAAITLLQERRAALISAAVTGKIDVRG 442