BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0057.p         (142 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3019 [J] COG0087 Ribosomal protein L3 Rso Ralstonia solanacearum   186   2e-47
NMB0142 [J] COG0087 Ribosomal protein L3 Nme Neisseria meningiti...   162   1e-40
NMA0129 [J] COG0087 Ribosomal protein L3 NmA Neisseria meningiti...   162   1e-40
PA4263 [J] COG0087 Ribosomal protein L3 Pae Pseudomonas aeruginosa    144   5e-35
PM1415 [J] COG0087 Ribosomal protein L3 Pmu Pasteurella multocida     137   6e-33

>RSc3019 [J] COG0087 Ribosomal protein L3 Rso Ralstonia solanacearum
          Length = 220

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 103/123 (83%)

Query: 1   MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60
           MSLGLVGRKVGM R+FT+DGDSIPVTVL+V  NRVTQIKT E DGY+AVQVTFG RRASR
Sbjct: 1   MSLGLVGRKVGMTRVFTDDGDSIPVTVLEVGGNRVTQIKTDETDGYTAVQVTFGTRRASR 60

Query: 61  VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120
           V K  AGH AKAGVEAG ++ EFR+DA+KAAELK GD + + +F   QK+DVQG +IGKG
Sbjct: 61  VTKPLAGHLAKAGVEAGEIIVEFRIDATKAAELKLGDTIDVDLFSVDQKIDVQGTTIGKG 120

Query: 121 YAG 123
           YAG
Sbjct: 121 YAG 123


>NMB0142 [J] COG0087 Ribosomal protein L3 Nme Neisseria meningitidis MC58
          Length = 214

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 98/123 (79%)

Query: 1   MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60
           M+LGLVGRKVGM R+F E G S+PVTVLD+S NRVTQ+K+ + DGY+AVQVTFGQ++A+R
Sbjct: 1   MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTDGYTAVQVTFGQKKANR 60

Query: 61  VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120
           V KA AGHFAKAGVEAG  L EF +   K AELKAGD + + MFE GQ VDV G S GKG
Sbjct: 61  VNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVSMFEVGQLVDVTGTSKGKG 120

Query: 121 YAG 123
           ++G
Sbjct: 121 FSG 123


>NMA0129 [J] COG0087 Ribosomal protein L3 NmA Neisseria meningitidis Z2491
          Length = 214

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 98/123 (79%)

Query: 1   MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60
           M+LGLVGRKVGM R+F E G S+PVTVLD+S NRVTQ+K+ + DGY+AVQVTFGQ++A+R
Sbjct: 1   MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTDGYTAVQVTFGQKKANR 60

Query: 61  VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120
           V KA AGHFAKAGVEAG  L EF +   K AELKAGD + + MFE GQ VDV G S GKG
Sbjct: 61  VNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVSMFEVGQLVDVTGTSKGKG 120

Query: 121 YAG 123
           ++G
Sbjct: 121 FSG 123


>PA4263 [J] COG0087 Ribosomal protein L3 Pae Pseudomonas aeruginosa
          Length = 211

 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 92/123 (74%), Gaps = 3/123 (2%)

Query: 1   MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60
           M++G+VGRK GM RIFTE+G SIPVTV++V  NRVTQ KT E DGY AVQVT G+RRASR
Sbjct: 1   MTIGVVGRKCGMTRIFTEEGVSIPVTVIEVEPNRVTQFKTEETDGYRAVQVTAGERRASR 60

Query: 61  VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120
           V KA AGHFAKA V AG  + EFR+   + A   AGD + + +F+AGQ VDV G S GKG
Sbjct: 61  VTKAQAGHFAKANVAAGRGVWEFRLGEEQYA---AGDQITVDLFQAGQMVDVTGESKGKG 117

Query: 121 YAG 123
           +AG
Sbjct: 118 FAG 120


>PM1415 [J] COG0087 Ribosomal protein L3 Pmu Pasteurella multocida
          Length = 209

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 3   LGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASRVV 62
           +GLVGRKVGM RIF EDG SIPVTV+++  NRVTQ+KT E DGYSA+QVT G ++ASRV 
Sbjct: 2   IGLVGRKVGMTRIFNEDGVSIPVTVIEIEANRVTQVKTVETDGYSAIQVTTGSKKASRVT 61

Query: 63  KAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKGYA 122
           K  AGHF KAGVEAG  L EFR   ++  E   G  + + +F   +KVDV G S GKG+A
Sbjct: 62  KPEAGHFVKAGVEAGRGLWEFR--TTEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFA 119

Query: 123 G 123
           G
Sbjct: 120 G 120