BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0033.p (207 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2994 [J] COG0522 Ribosomal protein S4 and related proteins Rs... 369 e-102 NMB0167 [J] COG0522 Ribosomal protein S4 and related proteins Nm... 325 3e-89 NMA0104 [J] COG0522 Ribosomal protein S4 and related proteins Nm... 325 3e-89 PA4239 [J] COG0522 Ribosomal protein S4 and related proteins Pae... 305 3e-83 rpsD [J] COG0522 Ribosomal protein S4 and related proteins Eco E... 298 4e-81 >RSc2994 [J] COG0522 Ribosomal protein S4 and related proteins Rso Ralstonia solanacearum Length = 207 Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/207 (84%), Positives = 192/207 (92%) Query: 1 VARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 +ARY GPKAKLSRREGTDLFLKSARRSL KCKLDSKPGQHGRTSGARTSDYGNQLREKQ Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 Query: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120 KVKR+YGVLERQFRRYFAEADRRKGNTGE LL+LLESRLDNVVYRMGFGSTRAEARQLVS Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120 Query: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180 HKA+ VNGQ +N+ S +K+GDV+AIREK+KKQVRIAE+LSLAE GFP WV+VD+KK+E Sbjct: 121 HKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQTGFPGWVAVDAKKME 180 Query: 181 GTFKSSPDRSEIAADVNESLIVELYSR 207 GTFK +PDR +IA D+NESLIVELYSR Sbjct: 181 GTFKQAPDRGDIAGDINESLIVELYSR 207 >NMB0167 [J] COG0522 Ribosomal protein S4 and related proteins Nme Neisseria meningitidis MC58 Length = 206 Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/207 (77%), Positives = 180/207 (86%), Gaps = 1/207 (0%) Query: 1 VARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 +ARYIGPK KL+RREGTDLFLKSARRSLDSKCK+DS PGQHG R SDYG QLREKQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120 K++R+YGVLERQFRRYFAEADRRKG+TGE LL+LLESRLDNVVYRMGFGSTRAEARQLVS Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119 Query: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180 HKA+ VNGQVVNI S+ VKAGDV+++REKAKKQVRI EAL LA G P WVSVD+ KLE Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLE 179 Query: 181 GTFKSSPDRSEIAADVNESLIVELYSR 207 G FK+ PDRSE+ D+NE L+VE YS+ Sbjct: 180 GVFKNMPDRSELTGDINEQLVVEFYSK 206 >NMA0104 [J] COG0522 Ribosomal protein S4 and related proteins NmA Neisseria meningitidis Z2491 Length = 206 Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/207 (77%), Positives = 180/207 (86%), Gaps = 1/207 (0%) Query: 1 VARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 +ARYIGPK KL+RREGTDLFLKSARRSLDSKCK+DS PGQHG R SDYG QLREKQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120 K++R+YGVLERQFRRYFAEADRRKG+TGE LL+LLESRLDNVVYRMGFGSTRAEARQLVS Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119 Query: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180 HKA+ VNGQVVNI S+ VKAGDV+++REKAKKQVRI EAL LA G P WVSVD+ KLE Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLE 179 Query: 181 GTFKSSPDRSEIAADVNESLIVELYSR 207 G FK+ PDRSE+ D+NE L+VE YS+ Sbjct: 180 GVFKNMPDRSELTGDINEQLVVEFYSK 206 >PA4239 [J] COG0522 Ribosomal protein S4 and related proteins Pae Pseudomonas aeruginosa Length = 206 Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 149/207 (71%), Positives = 175/207 (84%), Gaps = 1/207 (0%) Query: 1 VARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 +ARYIGPK KLSRREGTDLFLKS R+LDSKCK ++ PGQHG+ G R SDYG QLREKQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRG-RLSDYGLQLREKQ 59 Query: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120 KV+R+YGVLERQFR Y+ EA RRKG+TGE LL+LLE RLDNVVYRMGFGSTR+E+RQLVS Sbjct: 60 KVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119 Query: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180 HKA+TVNGQ VNI SY VKAGDV+A+REK+K Q+RIA+AL L G +WV VD K Sbjct: 120 HKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKKA 179 Query: 181 GTFKSSPDRSEIAADVNESLIVELYSR 207 GTFKS+P RS+++AD+NE+LIVELYS+ Sbjct: 180 GTFKSAPARSDLSADINENLIVELYSK 206 >rpsD [J] COG0522 Ribosomal protein S4 and related proteins Eco Escherichia coli K12 Length = 206 Score = 298 bits (764), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 144/207 (69%), Positives = 169/207 (81%), Gaps = 1/207 (0%) Query: 1 VARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60 +ARY+GPK KLSRREGTDLFLKS R++D+KCK++ PGQHG R SDYG QLREKQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 Query: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120 KV+R+YGVLERQFR Y+ EA R KGNTGE LL LLE RLDNVVYRMGFG+TRAEARQLVS Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 Query: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180 HKA+ VNG+VVNIASY V DV++IREKAKKQ R+ AL LAE P W+ VD+ K+E Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 Query: 181 GTFKSSPDRSEIAADVNESLIVELYSR 207 GTFK P+RS+++AD+NE LIVELYS+ Sbjct: 180 GTFKRKPERSDLSADINEHLIVELYSK 206