BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0016.p (364 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 534 e-151 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 392 e-109 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 387 e-107 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 385 e-107 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 140 4e-33 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust. Identities = 249/364 (68%), Positives = 296/364 (81%), Gaps = 1/364 (0%) Query: 1 MSGTYADFDGQGGVEAIRMAIADAGGTINGKKVELVFADHQNKADIAANKAREWFDRDGV 60 +SG YAD DGQGGVEA++MAI D GG + GK +ELV ADHQNKADIAA+KAREW D+ G+ Sbjct: 39 LSGLYADIDGQGGVEAVKMAIEDEGGKVLGKPIELVTADHQNKADIAASKAREWMDQQGL 98 Query: 61 DMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTG 120 DMLVGG NSA SLAM KVA EKK+VFI +GAGT R TNEEC YT+ YAYDT ALA+GTG Sbjct: 99 DMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTARLTNEECTPYTIHYAYDTVALAKGTG 158 Query: 121 AAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQ 180 +A+ +QGGKSW+FLTADYAFG SLE DT+ VVK+NGG VVG+ + PL+ SDFSS+LLQAQ Sbjct: 159 SAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQ 218 Query: 181 SSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDG 240 +SKAQILGLA AGGD IN+IKAA EFG+ KTMK+AGLL+FIND HSLGLQ +G+ +TD Sbjct: 219 ASKAQILGLANAGGDTINSIKAAKEFGITKTMKIAGLLMFINDVHSLGLQTAEGLLMTDS 278 Query: 241 WYWDLNDESRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKN 300 WYWD+ND +R +A RYF KMKKMPS QA D SAV Y+KAV A G+ D D+V+ L+K Sbjct: 279 WYWDMNDATRKFATRYFSKMKKMPSSLQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKT 338 Query: 301 RIKDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKC 360 ++ DFF S G +R DGR VHDMYLM+VK P+ESK+PWDY K+V TIPG+QA+ T AESKC Sbjct: 339 QLNDFF-SKGTIRADGRYVHDMYLMQVKTPAESKKPWDYMKIVATIPGDQAFTTPAESKC 397 Query: 361 ALWK 364 L K Sbjct: 398 PLLK 401 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/364 (52%), Positives = 258/364 (70%), Gaps = 1/364 (0%) Query: 2 SGTYADFDGQGGVEAIRMAIADAGGTINGKKVELVFADHQNKADIAANKAREWFDRDGVD 61 SG YADF G+ EA +MA D GGT+ G +E++ ADHQNK D+A+N AR+W+D + VD Sbjct: 37 SGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPDVASNIARQWYDTEQVD 96 Query: 62 MLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGA 121 ++ S+ LA+ ++ EKKK+ I+ GA T+ T ++C Y +AYDT ALA GTG Sbjct: 97 SIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGFHWAYDTHALAVGTGG 156 Query: 122 AITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQS 181 ++ +QGG +WYFLTADYAFG SLE+ T++ V+S GG V+G+ R PL+T+D+SSFLLQAQ+ Sbjct: 157 SLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRHPLSTTDYSSFLLQAQA 216 Query: 182 SKAQILGLAVAGGDVINAIKAANEFG-VNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDG 240 S A+++GLA AG D NAIK A EFG V +LA LL + + H LGL+ QG+ LT+G Sbjct: 217 SGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEVHGLGLEAAQGLTLTEG 276 Query: 241 WYWDLNDESRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKN 300 +YWD +DESRA+ R+F + +MP+M QAG SAV QYLKA+K G+ + + V L + Sbjct: 277 FYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKEAGTDETEAVAKKLHEM 336 Query: 301 RIKDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKC 360 ++D F +G V P+GRM++DMYLMEVKKP ESK PWDYYK++ TIPG+QAYM ES C Sbjct: 337 PVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLATIPGDQAYMKPEESGC 396 Query: 361 ALWK 364 L K Sbjct: 397 PLVK 400 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/364 (52%), Positives = 251/364 (68%), Gaps = 1/364 (0%) Query: 2 SGTYADFDGQGGVEAIRMAIADAGGTINGKKVELVFADHQNKADIAANKAREWFDRDGVD 61 SG YADF G+ EA MA+ D GG + G VE+V ADHQNK DIA+N AR+W+D + VD Sbjct: 37 SGVYADFGGKSSYEAALMAVEDFGGKVLGVPVEVVTADHQNKPDIASNIARQWYDTEQVD 96 Query: 62 MLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGA 121 ++ S+ +LA+ ++ EKKK+ I GA TT T ++C+ Y +AYDT +LA GTG Sbjct: 97 SIMELTTSSVALAVQAISKEKKKIDIVTGAATTELTGKQCSPYGFHWAYDTHSLAVGTGG 156 Query: 122 AITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQS 181 A+ +QGG SW+FLTADYAFG SLE++T VK NGG VVGA R PLAT+DFSSFLLQAQS Sbjct: 157 ALVKQGGDSWFFLTADYAFGYSLEENTGNYVKENGGTVVGAVRHPLATTDFSSFLLQAQS 216 Query: 182 SKAQILGLAVAGGDVINAIKAANEFG-VNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDG 240 S A+++GLA AG D NAIK A EFG V +LA LL + + H LGL QG+ LT+G Sbjct: 217 SGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQRLAALLFTLAEVHGLGLDAAQGLTLTEG 276 Query: 241 WYWDLNDESRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKN 300 +YW+ ++ES + R+ + KMP+M AG SAV QYLKA++ G+ + + V L Sbjct: 277 FYWNRDEESAKFGKRFMERTGKMPNMVHAGTYSAVLQYLKAIEKAGTDETEAVAKELHAL 336 Query: 301 RIKDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKC 360 + D F NG V P+GRM+HDMYL+EVKKP ESK PWDY+K++ TIPG++A++ A+S C Sbjct: 337 PVDDVFAKNGTVAPNGRMIHDMYLLEVKKPDESKEPWDYFKVLATIPGKEAFIDPAQSGC 396 Query: 361 ALWK 364 L K Sbjct: 397 ELVK 400 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/364 (51%), Positives = 258/364 (70%), Gaps = 1/364 (0%) Query: 2 SGTYADFDGQGGVEAIRMAIADAGGTINGKKVELVFADHQNKADIAANKAREWFDRDGVD 61 SG YA+F G+ EA +MA+ D GG + G VE+V ADHQNKAD+A+N AR+W+D + VD Sbjct: 38 SGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVASNIARQWYDTEQVD 97 Query: 62 MLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGA 121 ++ +S+ LA+ ++ +KKK+ ++ GA TT T ++C+ Y +AYDT +LA GTG Sbjct: 98 SIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWAYDTYSLAVGTGG 157 Query: 122 AITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQS 181 A+ +QGG SW+FLTADYAFG SLE++TS VK+NGG V+G+ R PLAT+D+SSFLLQAQS Sbjct: 158 ALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPLATTDYSSFLLQAQS 217 Query: 182 SKAQILGLAVAGGDVINAIKAANEFG-VNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDG 240 S A+++GLA AG D NAIK A+EFG V +LA LL + + H LGL+ QG+ LT+G Sbjct: 218 SGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVHGLGLEAAQGLTLTEG 277 Query: 241 WYWDLNDESRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKN 300 +YWD +DESR + R+ + MP+M G SAV YLKA++ G+ DAD V +++ Sbjct: 278 FYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKAGTDDADAVAKAMKEM 337 Query: 301 RIKDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKC 360 + D F +G V +GRM+HDMYLMEVKKP ESK+PWDYYK++ TIPG++A+M +S C Sbjct: 338 PVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLATIPGKEAFMDPTKSGC 397 Query: 361 ALWK 364 L K Sbjct: 398 PLVK 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 131/245 (53%), Gaps = 4/245 (1%) Query: 1 MSGTYADFDGQGGVEAIRMAIA--DAGGTINGKKVELVFADHQNKADIAANKAREWFDRD 58 M+G YA Q V R+A+A +A G I G+ +EL+ D N KAR+ +RD Sbjct: 48 MTGVYAAV-AQNEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQKARKLIERD 106 Query: 59 GVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARG 118 V L+G VNS + A+ +V+ EKK + I G T T +C + T+ A Sbjct: 107 QVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCNTTSMEANA 166 Query: 119 TGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQ 178 + + GK W+F+T DYAFG +L+K + ++ GG + G PL T+DFS++L++ Sbjct: 167 VANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTTDFSAYLIK 226 Query: 179 AQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIFINDTHSLGLQMTQGMYLT 238 A+++ +L + G D++N +K +FG+ K M +AGL + ++ + G+++ Sbjct: 227 ARAANPDVLLVLPQGSDMVNCLKQIAQFGIGKQMHIAGLQQELESLEAMPPEARVGIWMF 286 Query: 239 DGWYW 243 + WYW Sbjct: 287 E-WYW 290