BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0011.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum 221 8e-58 NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58 163 3e-40 NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z... 163 3e-40 PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa 140 3e-33 VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae 137 2e-32 >RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum Length = 219 Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/199 (57%), Positives = 143/199 (71%), Gaps = 4/199 (2%) Query: 24 HAADDKKAPIKADPAKGEALYTNGDNARNIVACVSCHGAAGNSTITQNPKLSGQHEAYIA 83 HA + K A KAD A+GE L+ G A + AC SCHG GNST NPKL+GQH AYI Sbjct: 23 HAEEPKVA--KADAARGETLFNTGVPANGVPACTSCHGPGGNSTANANPKLAGQHAAYIE 80 Query: 84 KQLLNFRTP-DRNNPVMSPLAKALSDEDIHNVAAYLAAQ-APKPGAAKNKDTIELGKHIW 141 KQL +F+ +RN PVMS A ALSD+D+ ++ AY+A Q A KP +AKNKDTIELG+ ++ Sbjct: 81 KQLKDFKAKTERNQPVMSLYAGALSDQDMKDIGAYIAKQPAWKPSSAKNKDTIELGQKLY 140 Query: 142 RGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVAQLTNFRGGARTNSAQMTAIA 201 RGG A + + ACAGCH P GAGIPAQYPR+ GQ +YT AQL F+ G+R+NS QM +A Sbjct: 141 RGGDAKRGIAACAGCHGPAGAGIPAQYPRIGGQFAEYTEAQLVAFQNGSRSNSVQMHDLA 200 Query: 202 DRLSDKEIKAVADYIAGLK 220 R++ +IKAVADYIAGL+ Sbjct: 201 GRMTALQIKAVADYIAGLR 219 >NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58 Length = 207 Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 25/219 (11%) Query: 11 TVLAAVLAVSSAAHAADDKKAPIKADPAKGEALYTNGDNARNIVACVSCHGAAGNSTITQ 70 T+LA VLA + + A KAD KG+ + C +CH A GNS I Sbjct: 5 TLLAFVLAAGAVS-------ASPKADVEKGKQVAA--------TVCAACHAADGNSGIAM 49 Query: 71 NPKLSGQHEAYIAKQLLNFRTPDRNN---PVMSPLAKALSDEDIHNVAAYLAAQAPKPGA 127 P+L+ QH AYI Q + R R + VM P+ LSD+DI NV+A+ A Q PK G Sbjct: 50 YPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGE 109 Query: 128 AKNKDTIELGKHIWRGGIASKNVPACAGCHSPNGAGIPA------QYPRLAGQHQDYTVA 181 A K+ ELG I+RGG++ K VPAC CH P+GAG+P YPRL GQHQ Y V Sbjct: 110 ANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVE 169 Query: 182 QLTNFRGGARTNSAQMTAIADRLSDKEIKAVADYIAGLK 220 Q+ ++ G R N+ M IA+R+S++++KAVA++I GL+ Sbjct: 170 QMNAYKSGQRKNTI-MEDIANRMSEEDLKAVANFIQGLR 207 >NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z2491 Length = 207 Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 25/219 (11%) Query: 11 TVLAAVLAVSSAAHAADDKKAPIKADPAKGEALYTNGDNARNIVACVSCHGAAGNSTITQ 70 T+LA VLA + + A KAD KG+ + C +CH A GNS I Sbjct: 5 TLLAFVLAAGAVS-------ASPKADVEKGKQVAA--------TVCAACHAADGNSGIAM 49 Query: 71 NPKLSGQHEAYIAKQLLNFRTPDRNN---PVMSPLAKALSDEDIHNVAAYLAAQAPKPGA 127 P+L+ QH AYI Q + R R + VM P+ LSD+DI NV+A+ A Q PK G Sbjct: 50 YPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGE 109 Query: 128 AKNKDTIELGKHIWRGGIASKNVPACAGCHSPNGAGIPA------QYPRLAGQHQDYTVA 181 A K+ ELG I+RGG++ K VPAC CH P+GAG+P YPRL GQHQ Y V Sbjct: 110 ANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVE 169 Query: 182 QLTNFRGGARTNSAQMTAIADRLSDKEIKAVADYIAGLK 220 Q+ ++ G R N+ M IA+R+S++++KAVA++I GL+ Sbjct: 170 QMNAYKSGQRKNTI-MEDIANRMSEEDLKAVANFIQGLR 207 >PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa Length = 201 Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 5/168 (2%) Query: 56 CVSCHGAAGNSTITQNPKLSGQHEAYIAKQLLNFRTPDRNNPVMSPLAKALSDEDIHNVA 115 C +CHGA GNS PKL+GQ E Y+ KQ+ + + R M+ L LSD+D+ ++A Sbjct: 34 CGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIA 93 Query: 116 AYLAAQAPKPGAAKNKDTIELGKHIWRGGIASKNVPACAGCHSPNGAGI-PAQYPRLAGQ 174 AY A+Q G A + + + G+ ++RGG ++ +PAC GCHSP+G GI A +P L GQ Sbjct: 94 AYFASQKMSVGMA-DPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQ 152 Query: 175 HQDYTVAQLTNFRGGARTNSAQ---MTAIADRLSDKEIKAVADYIAGL 219 H Y QLT+FR G RTN M +IA +LS+K+I A++ YI GL Sbjct: 153 HATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGL 200 >VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae Length = 223 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 11/176 (6%) Query: 54 VACVSCHGAAGNSTITQNPKLSGQHEAYIAKQLLNFRT-------PDRNNPVMSPLAKAL 106 + C +CHGA GNS +T PKL+GQHE Y+ KQL + R +PVMS +A L Sbjct: 48 LTCAACHGADGNSPLTIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDPVMSAMAMPL 107 Query: 107 SDEDIHNVAAYLAAQAPKPGAAKNKDTIELGKHIWRGGIASKNVPACAGCHSPNGAGIP- 165 SDEDI ++AAY A+ P G +D + GK ++ G AS+ + AC CH P G G Sbjct: 108 SDEDIADLAAYYASM-PISGNTTPEDVVAQGKVLYTAGDASRGLTACIACHGPRGNGTEL 166 Query: 166 AQYPRLAGQHQDYTVAQLTNFRGGARTN--SAQMTAIADRLSDKEIKAVADYIAGL 219 + +P+++GQH DY AQL FR G R N + M +A +L+D +I ++ Y+ GL Sbjct: 167 SGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDILSKYVGGL 222 Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 38 AKGEALYTNGDNARNIVACVSCHGAAGNST-ITQNPKLSGQHEAYIAKQLLNFRTPDR-- 94 A+G+ LYT GD +R + AC++CHG GN T ++ PK+SGQH YI QL FR+ R Sbjct: 135 AQGKVLYTAGDASRGLTACIACHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRAN 194 Query: 95 -NNPVMSPLAKALSDEDIHNVAAYL 118 N +M +A L+D DI ++ Y+ Sbjct: 195 DMNEMMRDVAHKLTDADIDILSKYV 219