BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0298.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum 290 2e-78 Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glut... 154 1e-37 SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus... 149 5e-36 AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefa... 147 2e-35 FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum 142 9e-34 >RSc3337 [R] COG0730 Predicted permeases Rso Ralstonia solanacearum Length = 252 Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 148/252 (58%), Positives = 187/252 (74%) Query: 2 LDYVVLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAI 61 +D+V+L A F+AGLIDAV GGGGLV +P LFS +PN APATL+GTNK+A + GT+ AA Sbjct: 1 MDFVLLAVAGFLAGLIDAVAGGGGLVQIPALFSAYPNLAPATLIGTNKLASMSGTATAAA 60 Query: 62 NFARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDF 121 + R V + W PA + AF S GA+ +THIP + +R+ALPFVL+ + +YT+ KKD Sbjct: 61 RYGRTVRIYWGATAPAVVTAFLCSLLGAWALTHIPAEPLRRALPFVLVLLLVYTVAKKDL 120 Query: 122 GTTHAPTLSGTREIIYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKF 181 G HAP+L+G RE A L G +GFYDGVFGPGTGSFL+ +FVRVF YDFL ASA +K Sbjct: 121 GAEHAPSLAGWRERGVALLAGAIIGFYDGVFGPGTGSFLMIVFVRVFGYDFLHASASTKI 180 Query: 182 VNIATNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGA 241 VN+ATN+AAL GHV WQLGL+MAV N+ G+ G+ LA+KHGS FVRK+F+ VV A Sbjct: 181 VNLATNVAALLLLASKGHVWWQLGLVMAVANVLGNQAGSYLALKHGSRFVRKMFIAVVLA 240 Query: 242 LILKSGYDAFLK 253 LILK+ YDAFL+ Sbjct: 241 LILKTAYDAFLR 252 >Cgl0140 [R] COG0730 Predicted permeases Cgl Corynebacterium glutamicum Length = 260 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 139/236 (58%), Gaps = 4/236 (1%) Query: 6 VLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFAR 65 +L A VAG IDAV+GGGGLVL+P + +V P AP T L +NK+A V GT++AA R Sbjct: 12 ILIAGAAVAGWIDAVIGGGGLVLIPLILAVMPQLAPVTALASNKLAAVTGTASAAFTLVR 71 Query: 66 KVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTH 125 +V + + A S GA + I ++R + +++ V L + K +FGT Sbjct: 72 RVKPDKKLLALYVLVAAVCSGAGALAASLIDKQIMRPLIIVLMLVVGLIVVFKPNFGTGE 131 Query: 126 APTL-SGTREIIYAALIG-GAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVN 183 + L +G + +AA++ G + YDG+FGPGTG FL+ F + S +FLS++A++K VN Sbjct: 132 SKALPTGWKR--WAAIVAVGLIAAYDGIFGPGTGMFLIMAFTALLSQNFLSSAAMAKVVN 189 Query: 184 IATNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVV 239 ATNL AL F GH+ W LGL++AV N+ G+ +G R + G+ +R L +V Sbjct: 190 TATNLGALIVFIIGGHMWWTLGLVLAVANVAGAQLGARTVLGGGTRLIRYALLTLV 245 >SA1536 [R] COG0730 Predicted permeases Sau Staphylococcus aureus N315 Length = 256 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 141/239 (58%), Gaps = 5/239 (2%) Query: 12 FVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFARKVAVRW 71 F+A ID+VVGGGGL+ P L ++ P+ LGTNK+A G+ + I F R V Sbjct: 16 FIAAFIDSVVGGGGLISTPALLAI--GLPPSVALGTNKLASSFGSLTSMIKFIRSGKVDL 73 Query: 72 STVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTHAPT-LS 130 V F S GAY+ T +P+ +++ + L +V ++TL KKD+G T T + Sbjct: 74 FVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFT 133 Query: 131 GTREIIYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVNIATNLAA 190 + II+AAL +GFYDG G GTGSF++F+ + VF +DFLSA+ +K +N A+N+ A Sbjct: 134 FKKAIIFAALFI-LIGFYDGFVGGGTGSFMLFVLL-VFGFDFLSAAGNAKVLNFASNIGA 191 Query: 191 LCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGALILKSGYD 249 L F G V + +GL+MA+ I GS G A+K G +V+ LF+++ LILK+ +D Sbjct: 192 LVLFMVLGQVDYVIGLIMAISMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFD 250 >AGc2926 [R] COG0730 Predicted permeases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 288 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%) Query: 4 YVVLCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINF 63 ++VL A AG ID++ GGGGL+ +P + + AP LGTNK+ G+++A + + Sbjct: 30 FIVLFCVAIFAGFIDSIAGGGGLITIPAMMIM--GIAPLDTLGTNKLQAQFGSASATLAY 87 Query: 64 ARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGT 123 AR+ V P + A A GA +P DL+R +PF+LI +ALY K Sbjct: 88 ARRGHVNLKEQLPMGLMAMAGGMLGALTAAFVPADLLRTIMPFLLITIALYFALKPQLSD 147 Query: 124 THAPTLSGTREI---IYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSK 180 + R I ++ ++ +GFYDGVFGPG GSF + FV + + L A+A +K Sbjct: 148 -----IDSHRRITPFVFGLMVAPLIGFYDGVFGPGAGSFYMLAFVALAGFGMLKATAHTK 202 Query: 181 FVNIATNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVG 240 +N+ +N F G V+W+LGL M + G+ VG+R AMK+G+ +R L +V Sbjct: 203 LLNLGSNFGGFVVFAMGGAVLWKLGLAMGLGQFIGAQVGSRFAMKNGAKIIRPLLVVSCL 262 Query: 241 ALILKSGYDA 250 A+ K DA Sbjct: 263 AMATKLLVDA 272 >FN1706 [R] COG0730 Predicted permeases Fnu Fusobacterium nucleatum Length = 254 Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 146/256 (57%), Gaps = 12/256 (4%) Query: 1 MLDYVVLCGAAFVAGLIDAVVGGGGLVLVPTLFSV-FPNTAPATLLGTNKVAGVMGTSAA 59 ++ +++L F+A ++DA+ GGGGL+ +P F+V FP P LGTNK++ + T A+ Sbjct: 5 IVKFLILAVFCFIAAVVDAISGGGGLISLPAYFAVGFP---PHMALGTNKLSAFLSTFAS 61 Query: 60 AINFARKVAVRWSTVTPAAMAAFAFSFFGAY--VVTHIPTDLIR-KALPF-VLIAVALYT 115 A F + V V+ FAFS GA V T + D K + F +LI V LY Sbjct: 62 AFKFWKAKKVNVEIVSKL----FAFSLAGAVLGVKTAVSIDTKYFKPISFGILILVFLYA 117 Query: 116 LKKKDFGTTHAPTLSGTREIIYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSA 175 LK K G + + + II ++ +GFYDG GPGT +FL+F +++F DF SA Sbjct: 118 LKNKSLGENNYYKGTTPKTIILGKIMAFCLGFYDGFLGPGTAAFLMFCLIKIFKLDFSSA 177 Query: 176 SAVSKFVNIATNLAALCWFGYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLF 235 S +K +N+++N A+L F + G + W G+ +A+ G+++G+RLA+ G+ F++ +F Sbjct: 178 SGNTKILNLSSNFASLVVFAFLGKLNWAYGISIAIVMTFGAIIGSRLAILKGNKFIKPVF 237 Query: 236 LVVVGALILKSGYDAF 251 LVV LILK + F Sbjct: 238 LVVTIVLILKMSVEIF 253