BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0285.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0078 [T] COG2204 Response regulator containing CheY-like rece... 300 1e-81 NMA0159 [T] COG2204 Response regulator containing CheY-like rece... 178 1e-44 NMB0115 [T] COG2204 Response regulator containing CheY-like rece... 177 2e-44 SMc01045 [T] COG2204 Response regulator containing CheY-like rec... 99 9e-21 BMEI0868 [T] COG2204 Response regulator containing CheY-like rec... 95 2e-19 >RSc0078 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 239 Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/240 (67%), Positives = 174/240 (72%), Gaps = 11/240 (4%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEILGDEGHVV AENAQQARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILGDEGHVVEVAENAQQAREHRNGATPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW GLLTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLL AV+QGL+ Sbjct: 61 VTLLKEWASQGLLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLAAVEQGLAR 120 Query: 121 SREAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMGSEPLHHGTPAATPFGQV 180 +E R + P VAAV G++ + A G+ P Sbjct: 121 GKERPRVSPAAPLAVAAVGGGSAPLAAAAQGAVLATDRADVNGA-----------PVRAA 169 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 SFD+PLREARD FERAYFEYHL RE GSMTRVAE+TGLERTHLYRKLKQLGVE Sbjct: 170 EGGGMQFSFDMPLREARDLFERAYFEYHLQREGGSMTRVAEKTGLERTHLYRKLKQLGVE 229 >NMA0159 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains NmA Neisseria meningitidis Z2491 Length = 425 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 82/119 (68%), Positives = 102/119 (85%) Query: 2 ANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGV 61 ++IL+VDDE+GIR+LLSEIL DEG+ V AENA++AR+LR P +VLLDIWMPD DG+ Sbjct: 4 SDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARPAMVLLDIWMPDCDGI 63 Query: 62 TLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 TLLKEW ++G L MPV+MMSGHA+IDTAVEAT+IGAL+FLEKPI+LQKLL AV+ L + Sbjct: 64 TLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGALDFLEKPISLQKLLSAVENALKY 122 Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 110 LLKAVQQGLSHSREAVRPASYRPAPVAAVAN----GASDSLHTPEHVAPVAAYAPAMGSE 165 L++ + ++ S++ + PAS+ +AA+ G D L + + A +G+ Sbjct: 281 LIQGITCNVAESQK-IAPASFSEDALAALTRYEWPGNFDQLSSVVATLLLEADGQEIGAG 339 Query: 166 PLHHGTPAATPFGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGL 225 + P D +F+LPLRE R+ ER YFEYH+ +E +M++VA++ GL Sbjct: 340 AVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSKVAQKVGL 399 Query: 226 ERTHLYRKLKQLGV 239 ERTHLYRKLKQLG+ Sbjct: 400 ERTHLYRKLKQLGI 413 >NMB0115 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Nme Neisseria meningitidis MC58 Length = 425 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 81/119 (68%), Positives = 102/119 (85%) Query: 2 ANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGV 61 ++IL+VDDE+GIR+LLSEIL DEG+ V AENA++AR+LR P +VLLDIWMPD DG+ Sbjct: 4 SDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARPAMVLLDIWMPDCDGI 63 Query: 62 TLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 TLLKEW ++G L MPV+MMSGHA+IDTAVEAT+IGA++FLEKPI+LQKLL AV+ L + Sbjct: 64 TLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGAIDFLEKPISLQKLLSAVENALKY 122 Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 110 LLKAVQQGLSHSREAVRPASYRPAPVAAVAN----GASDSLHTPEHVAPVAAYAPAMGSE 165 L++ + ++ S++ + PAS+ +AA+ G D L + + A +G+ Sbjct: 281 LIQGIACNVAESQK-IAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQEIGAG 339 Query: 166 PLHHGTPAATPFGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGL 225 + P D +F+LPLRE R+ ER YFEYH+ +E +M++VA++ GL Sbjct: 340 AVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSQVAQKVGL 399 Query: 226 ERTHLYRKLKQLGV 239 ERTHLYRKLKQLG+ Sbjct: 400 ERTHLYRKLKQLGI 413 >SMc01045 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sme Sinorhizobium meliloti Length = 454 Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 20/206 (9%) Query: 2 ANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDT--D 59 A+ILVVDDE IRE++S IL DEGH TA +++ A VP L+ LDIWM + D Sbjct: 3 ADILVVDDEEDIREIVSGILSDEGHETRTAFDSESALAAINDRVPRLIFLDIWMQGSKLD 62 Query: 60 GVTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLS 119 G+ LL E ++ +PV+M+SGH I+TAV A + GA +F+EKP +L+ ++ L Sbjct: 63 GLALLDEI-KNRHPDLPVVMISGHGNIETAVSAIKRGAYDFIEKPFKADRLILIAERALE 121 Query: 120 HSR-----EAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMG---------SE 165 +S+ +R S P + + S E VAP + G + Sbjct: 122 NSKLKRENSELRRKSGDPVELIGTSVAVSQLRQMIEKVAPTNSRIMIQGPSGSGKELVAR 181 Query: 166 PLHHGTPAAT-PFGQVADNAANISFD 190 +H + A PF VA NAA I+ D Sbjct: 182 MIHRKSARANGPF--VALNAAAITPD 205 >BMEI0868 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Bme Brucella melitensis Length = 453 Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 3/123 (2%) Query: 2 ANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDT--D 59 A+ILVVDDE+ IR+L++ IL DEGH TA +A A P LV LDIW+ + D Sbjct: 3 ADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLVFLDIWLQGSRLD 62 Query: 60 GVTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLS 119 G+ LL E ++ +PV+M+SGH I+TAV A R GA +F+EKP +L+ ++ L Sbjct: 63 GLALLDEIKKQH-PELPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILVAERALE 121 Query: 120 HSR 122 S+ Sbjct: 122 TSK 124