BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0265.p         (81 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0340 [S] COG2960 Uncharacterized protein conserved in bacteri...   111   5e-25
NMA2081 [S] COG2960 Uncharacterized protein conserved in bacteri...    99   3e-21
NMB0404 [S] COG2960 Uncharacterized protein conserved in bacteri...    96   2e-20
PA5289 [S] COG2960 Uncharacterized protein conserved in bacteria...    69   2e-12
STM3196 [S] COG2960 Uncharacterized protein conserved in bacteri...    62   4e-10

>RSc0340 [S] COG2960 Uncharacterized protein conserved in bacteria Rso
          Ralstonia solanacearum
          Length = 87

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 67/80 (83%)

Query: 1  MDKPPFFEDLQSKINKAIENSPAKDIEKNVKAMLSQGFAKLDLVTREEFDVQAQVLAKTR 60
          M     F D Q+++++A+ NSPA DIEKNV+AM++QGF+KLDLVTREEFDVQ+QVLA+TR
Sbjct: 1  MKPTDLFTDFQNRVSEALRNSPAADIEKNVRAMMAQGFSKLDLVTREEFDVQSQVLARTR 60

Query: 61 ARLEALEARVAELEAQQKQT 80
          ARLE LE RVA+LEAQ K +
Sbjct: 61 ARLEELETRVAQLEAQLKTS 80


>NMA2081 [S] COG2960 Uncharacterized protein conserved in bacteria NmA
          Neisseria meningitidis Z2491
          Length = 117

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query: 6  FFEDLQSKINKAIENSPAKDIEKNVKAMLSQGFAKLDLVTREEFDVQAQVLAKTRARLEA 65
           FE++ SKI++ I NSPAKD+EKN+KAML   F ++DLVTREEFD+Q QVL KTR +L A
Sbjct: 17 LFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLVTREEFDIQQQVLIKTRTKLAA 76

Query: 66 LEARVAELEAQQ 77
          LEAR+A+LEA Q
Sbjct: 77 LEARLAKLEAAQ 88


>NMB0404 [S] COG2960 Uncharacterized protein conserved in bacteria Nme
          Neisseria meningitidis MC58
          Length = 106

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 58/72 (80%)

Query: 6  FFEDLQSKINKAIENSPAKDIEKNVKAMLSQGFAKLDLVTREEFDVQAQVLAKTRARLEA 65
           FE++ SKI++ I NSPAKD+EKN+KAML   F ++DLVTREEFD+Q QVL KTR +L A
Sbjct: 6  LFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLVTREEFDIQQQVLIKTRTKLAA 65

Query: 66 LEARVAELEAQQ 77
          LEAR+ +LEA Q
Sbjct: 66 LEARLEKLEAAQ 77


>PA5289 [S] COG2960 Uncharacterized protein conserved in bacteria Pae
          Pseudomonas aeruginosa
          Length = 86

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 2/60 (3%)

Query: 22 PAKDIEKNVKAMLSQGFAKLDLVTREEFDVQAQVLAKTRARLEALEARVAELEAQQKQTP 81
          P  ++E   +A++   F+KLDLV+REEFD Q  VLA+TRARLEALEA+VAELE+  K TP
Sbjct: 26 PKAELESQFRALMQSAFSKLDLVSREEFDSQMLVLARTRARLEALEAKVAELES--KLTP 83


>STM3196 [S] COG2960 Uncharacterized protein conserved in bacteria Sty
           Salmonella typhimurium LT2
          Length = 119

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 23  AKDIEKNVKAMLSQGFAKLDLVTREEFDVQAQVLAKTRARLEALEARVAELEAQQK 78
            +DIEK ++  L     +LDLV+REEFDVQ QVL +TR +L  LE R++ELEA+ K
Sbjct: 46  GEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDK 101