BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0263.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstoni...   178   3e-45
PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomon...   165   3e-41
SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhi...   159   2e-39
AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobact...   158   3e-39
mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhiz...   158   3e-39

>RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstonia
           solanacearum
          Length = 112

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLI AIIKPFKLDEVREALS +GV GITVTEVKGFGRQKGHTELYRGAEY+VDFLPK K
Sbjct: 1   MKLIMAIIKPFKLDEVREALSQVGVSGITVTEVKGFGRQKGHTELYRGAEYIVDFLPKVK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIF-XDLLDVIRIRTGETGKDAL 111
           IE AV D ++ERA+EAIE +ARTGKIGDGKIF  D+  VIRIRTGETG DAL
Sbjct: 61  IEVAVPDDVLERAVEAIEKSARTGKIGDGKIFVTDVEQVIRIRTGETGGDAL 112


>PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomonas
           aeruginosa
          Length = 112

 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 95/112 (84%), Gaps = 1/112 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKL+TAIIKPFKLD+VRE+LS IGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIF-XDLLDVIRIRTGETGKDAL 111
           I+ A+ D  ++R +EAI  AA TGKIGDGKIF  +L   IRIRTGET  DA+
Sbjct: 61  IDVAIADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGETDTDAI 112


>SMc03806 [E] COG0347 Nitrogen regulatory protein PII Sme Sinorhizobium
           meliloti
          Length = 112

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 95/112 (84%), Gaps = 1/112 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK++ AIIKPFKLDEVREAL+A+G+QG+TVTEVKG+GRQKGHTE+YRG EY V FLPK K
Sbjct: 1   MKIVMAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFXDLLD-VIRIRTGETGKDAL 111
           +E AV   IV+RA+EAI +AA+TG+IGDGKIF   +D  +RIRTGET  +AL
Sbjct: 61  VEIAVATEIVDRAVEAIASAAKTGQIGDGKIFVYSIDHAVRIRTGETDSEAL 112


>AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 157

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK I AIIKPFKLDEV+EAL  +G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 46  MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 105

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIF-XDLLDVIRIRTGETGKDAL 111
           +E  + D   E  +EAI  AA+TG+IGDGKIF  ++ +VIRIRTGETG DA+
Sbjct: 106 VEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNIEEVIRIRTGETGVDAI 157


>mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhizobium loti
          Length = 112

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 93/112 (83%), Gaps = 1/112 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK I AIIKPFKLDEV+EAL   G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIF-XDLLDVIRIRTGETGKDAL 111
           IE  + D  VE A+EAI  AA+TG+IGDGKIF  ++ +V+RIRTGETG DA+
Sbjct: 61  IEVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDAV 112