BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0245.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria menin...   145   3e-35
NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria menin...   145   3e-35
jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter py...   137   6e-33
VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae       136   1e-32
HP1199 [J] COG0222 Ribosomal protein L7/L12 Hpy Helicobacter pyl...   135   2e-32

>NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria meningitidis
           MC58
          Length = 123

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 103/125 (82%), Gaps = 2/125 (1%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAI+KEDILEAVG+L+VMELNDLVKAFEEKFGVSAAA+A          AA AEE+TEF 
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA--GAGAADAEEKTEFD 58

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KEG++KA+AE  +K+LEEAGA
Sbjct: 59  VVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGA 118

Query: 121 KAELK 125
           K E+K
Sbjct: 119 KVEIK 123


>NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria meningitidis
           Z2491
          Length = 123

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 103/125 (82%), Gaps = 2/125 (1%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAI+KEDILEAVG+L+VMELNDLVKAFEEKFGVSAAA+A          AA AEE+TEF 
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA--GAGAADAEEKTEFD 58

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KEG++KA+AE  +K+LEEAGA
Sbjct: 59  VVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGA 118

Query: 121 KAELK 125
           K E+K
Sbjct: 119 KVEIK 123


>jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter pylori J99
          Length = 125

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 94/125 (75%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAISKE++LE +G+LSV+EL++LVK FEEKFGVSA       A    GAAA +EE+TEF 
Sbjct: 1   MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTEFN 60

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           V+LA+ GA K+ VIK VREITGLGLKEAKD  +  P  +KEG+ K +AE  KKKLEE GA
Sbjct: 61  VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA 120

Query: 121 KAELK 125
           K E+K
Sbjct: 121 KVEVK 125


>VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae
          Length = 121

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 94/125 (75%), Gaps = 4/125 (3%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           M+I+ E IL+A+  +SVM++ +L+ A EEKFGVSAAA    A   G  AAAA EEQTEF 
Sbjct: 1   MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAA----AVVSGPAAAAAVEEQTEFN 56

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           V+LA  GANKV VIKAVR  TGLGLKEAK LVDGAP  VKE ++K +AEA KK+LEEAGA
Sbjct: 57  VILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEEAGA 116

Query: 121 KAELK 125
             E+K
Sbjct: 117 TVEVK 121


>HP1199 [J] COG0222 Ribosomal protein L7/L12 Hpy Helicobacter pylori 26695
          Length = 125

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 94/125 (75%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAISKE++LE +G+LSV+EL++LVK FE+KFGVSA       A    GAAA +EE+TEF 
Sbjct: 1   MAISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFN 60

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           V+LA+ GA K+ VIK VREITGLGLKEAKD  +  P  +KEG+ K +AE  KKKLEE GA
Sbjct: 61  VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA 120

Query: 121 KAELK 125
           K E+K
Sbjct: 121 KVEVK 125