BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0235.p (270 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2810 Non COG 213 5e-55 NMA2189 [R] COG4137 ABC-type uncharacterized transport system, p... 135 9e-32 NMB0296 [R] COG4137 ABC-type uncharacterized transport system, p... 133 4e-31 PA3747 [R] COG4137 ABC-type uncharacterized transport system, pe... 98 3e-20 XF0171 [R] COG4137 ABC-type uncharacterized transport system, pe... 92 2e-18 >RSc2810 Non COG Length = 303 Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/231 (56%), Positives = 161/231 (69%), Gaps = 1/231 (0%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAAVAVV 96 +HG L +F +++ GFA LSS LW+ V YW+E+ FSL + +LV+PVA V + Sbjct: 73 VHGMLLHETIFPAASMKFGFAYALSSMLWLGVGIYWIESLFFSLAGLGLLVMPVALVGSL 132 Query: 97 LPSAFPGNMVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQS 156 LP AFPG + S F H AI+ +AY T+AAFHA+LM+ E RLHT PA +S Sbjct: 133 LPLAFPGTQILGYAASPLFKLHFAIANVAYGLFTLAAFHAILMLAAERRLHTINRPA-ES 191 Query: 157 GWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTM 216 GW G LD LP LLT+EKLLFRLI GF LLTLT+ SG++FSEQLFG F DHKTVF + Sbjct: 192 GWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGMLFSEQLFGRAFHVDHKTVFAI 251 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSW +FG +L GRR+ GWRGR AL + +A FA L+LAYVGSRFVLEV+LHR Sbjct: 252 LSWAMFGGILIGRRFYGWRGRVALRWVMAAFATLMLAYVGSRFVLEVILHR 302 >NMA2189 [R] COG4137 ABC-type uncharacterized transport system, permease component NmA Neisseria meningitidis Z2491 Length = 268 Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 8/231 (3%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAAVAVV 96 +HG ALL + + +GF S +W+ + Y+ + +SL +++L+ P AA+ ++ Sbjct: 46 VHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYSLRGVQLLLYPCAALMLL 105 Query: 97 LPSAFPGNMVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQS 156 FPG F+ HI S+LAY IA +VL +L LH R Sbjct: 106 SGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRN------ 159 Query: 157 GWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTM 216 F LP+LL++EKL+F+ + GF LLT +V+SG F+E +FG P + HKTVF + Sbjct: 160 --FSKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGI 217 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSWL++G LL WRG+ A +T+ GF L++AY+GS+FVLE++L+R Sbjct: 218 LSWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILNR 268 >NMB0296 [R] COG4137 ABC-type uncharacterized transport system, permease component Nme Neisseria meningitidis MC58 Length = 268 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 8/231 (3%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAAVAVV 96 +HG ALL + + +GF S +W+ + Y+ + + L +++L+ P AA+ ++ Sbjct: 46 VHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAALMLL 105 Query: 97 LPSAFPGNMVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQS 156 FPG F+ HI S+LAY IA +VL +L LH R Sbjct: 106 SGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRS------ 159 Query: 157 GWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTM 216 F LP+LL++EKL+F+ + GF LLT +V+SG F+E +FG P + HKTVF + Sbjct: 160 --FSKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGI 217 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSWL++G LL WRG+ A +T+ GF L++AY+GS+FVLE++L R Sbjct: 218 LSWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR 268 >PA3747 [R] COG4137 ABC-type uncharacterized transport system, permease component Pae Pseudomonas aeruginosa Length = 266 Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 12/166 (7%) Query: 102 PGNMVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRL-HTRPGPAAQSGWFG 160 P V + LAHI +SILAY LTIA F A+L++LQ+ RL H P G Sbjct: 111 PHGTVEPINEQPGILAHILLSILAYGLLTIAVFQALLLLLQDYRLKHKHPS--------G 162 Query: 161 LALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTMLSWL 220 L + P L TME LLF + G++LL+L++LSG +F + LF HKT+ + +W+ Sbjct: 163 L-IRNFPPLQTMESLLFGFLWGGWSLLSLSLLSGWLFVDNLFAQ--HLAHKTILSCFAWV 219 Query: 221 LFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLH 266 +F +LL GR GWRG A+ +TLAGF +L+LAY GS+ V E +LH Sbjct: 220 VFAVLLWGRHQLGWRGHKAIRWTLAGFCLLMLAYFGSKLVREFILH 265 >XF0171 [R] COG4137 ABC-type uncharacterized transport system, permease component Xfa Xylella fastidiosa 9a5c Length = 282 Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 15/263 (5%) Query: 5 FFILAALLYLGCAFMPSERRVPISAGIVVGWMLHGG-ALLSDMFAPDALRVGFAVMLSST 63 +F+ +L+ F RR +VG + HGG L + A+ + F LS T Sbjct: 12 YFLAVWMLFCELLFNDISRRGEWRIPALVGLLAHGGYHFLVILGNAGAVDMHFFSALSIT 71 Query: 64 LWISVAAYWLENRNFSLDSMRVLVLPVAAVAVVLPSAFPGNMVALAGKSDWFLA-HIAIS 122 ++ L + + + ++ V+V P+A + L + + G + + + W + H ++ Sbjct: 72 FFVMSGLTILFSTHVGMGTVGVVVFPLAGL---LLAVYHGYGHSPSPELGWRVELHACLA 128 Query: 123 ILAYSTLTIAAFHAVLMVLQESRLHTRPGPAAQSGWFGLALDRLPALLTMEKLLFRLIAF 182 +L Y+TL IAA A+++ QE L R W G LP L +EKLLFR I Sbjct: 129 LLGYATLGIAALLAMMLWFQERALRQRN----VHHWRG----ALPPLTELEKLLFRTITV 180 Query: 183 GFTLLTLTVLSGVVFSEQLFGTPFKWDHKTVFTMLSWLLFGLLLAGRRWQGWRGRTALSF 242 GF LLT TV +G +F K HK+V ++LSW++FG LL GR GWRG A+ + Sbjct: 181 GFVLLTFTVFTGFLFVRDFLEQ--KLLHKSVLSVLSWVIFGGLLIGRWRYGWRGIKAVHW 238 Query: 243 TLAGFAILLLAYVGSRFVLEVVL 265 TL L+LA+ GS+ ++E++L Sbjct: 239 TLTAMMFLVLAFFGSKLMIELML 261