BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0230.p         (151 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT460 [B] COG5531 SWIB-domain-containing proteins implicated in ...   104   6e-23
CPn0577 Non COG                                                        95   6e-20
YMR233w [B] COG5531 SWIB-domain-containing proteins implicated i...    79   2e-15
CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated i...    74   8e-14
YOR295w [B] COG5531 SWIB-domain-containing proteins implicated i...    74   2e-13

>CT460 [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Ctr Chlamydia trachomatis
          Length = 86

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 62/79 (78%)

Query: 72  NAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLKAIF 131
           N+AFM+P+  SA L  +VGA P+PRTE+ KK+W+YIKK+ LQ+  NKRNI+ DDKL  +F
Sbjct: 6   NSAFMQPVNVSADLAAIVGAGPMPRTEIIKKMWDYIKKNGLQDPTNKRNINPDDKLAKVF 65

Query: 132 GGKKQVTMFEMTKLISAHL 150
           G +K + MF+MTK++S H+
Sbjct: 66  GTEKPIDMFQMTKMVSQHI 84


>CPn0577 Non COG
          Length = 87

 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 56/84 (66%)

Query: 67  AKRTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDK 126
           +++  N+AFM P+  S  L  +VG  P+PRTE+ KKVWEYIKKH  Q+ +NKRNI  D  
Sbjct: 2   SQKNKNSAFMHPVNISTDLAVIVGKGPMPRTEIVKKVWEYIKKHNCQDQKNKRNILPDAN 61

Query: 127 LKAIFGGKKQVTMFEMTKLISAHL 150
           L  +FG    + MF+MTK +S H+
Sbjct: 62  LAKVFGSSDPIDMFQMTKALSKHI 85


>YMR233w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 226

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 57/79 (72%), Gaps = 2/79 (2%)

Query: 72  NAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLKAIF 131
           N+  ++ +  SA L + +G++ LPRT+V K +W+YIK+H LQN +++R I  D+K++ IF
Sbjct: 117 NSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF 176

Query: 132 GGKKQVTMFEMTKLISAHL 150
           G  K++TMF M KL++ HL
Sbjct: 177 G--KKMTMFSMNKLLTKHL 193


>CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Ctr Chlamydia trachomatis
          Length = 122

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 3/106 (2%)

Query: 45  PKAAPKAAAPKKAAAKPAAKPAAKRTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVW 104
           PKA    A+ K  AAK   K +A     A   K  TPSAAL  V+GA P+ R E TKK+W
Sbjct: 16  PKAKKSIASTKGKAAKTVKKSSATTKKRAT--KAYTPSAALAAVIGADPVGRPEATKKLW 73

Query: 105 EYIKKHKLQNAENKRNIDADDKLKAIFGGKKQVTMFEMTKLISAHL 150
           EYIK+  LQ+ +NK+ I  D KL+ + G    + MF ++K +SAHL
Sbjct: 74  EYIKEKGLQSPQNKKIIIPDSKLQGVIGA-DPIDMFALSKKLSAHL 118


>YOR295w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 228

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 77  KPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLKAIFGGKKQ 136
           + +T S +L  ++G   L RTEV +++W YIK H LQN  NK+ I  D+KL+ I G  K 
Sbjct: 122 RKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KS 179

Query: 137 VTMFEMTKLISAHLS 151
             MFEM K++++H++
Sbjct: 180 TNMFEMHKILASHMT 194