BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0172.p         (51 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2521 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso R...    82   2e-16
RSc3359 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso R...    70   1e-12
msr8478 [L] COG0776 Bacterial nucleoid DNA-binding protein Mlo M...    69   4e-12
hupB [L] COG0776 Bacterial nucleoid DNA-binding protein Eco Esch...    68   5e-12
ZhupB [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ Esc...    68   5e-12

>RSc2521 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso Ralstonia
          solanacearum
          Length = 94

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 45/50 (90%)

Query: 1  LVGFGSFSTGKRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAVNKKK 50
          LVGFGSFS+GKRAARTGRNP+TGE IKI A  TVKF+AGK FK+AVNKKK
Sbjct: 45 LVGFGSFSSGKRAARTGRNPRTGEAIKIPATKTVKFTAGKGFKDAVNKKK 94


>RSc3359 [L] COG0776 Bacterial nucleoid DNA-binding protein Rso Ralstonia
          solanacearum
          Length = 92

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 1  LVGFGSFSTGKRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAVN 47
          L+GFG+FS G+RA R  RNP+TGEEIK+ AA TVKF AG+ FK+AVN
Sbjct: 45 LIGFGTFSQGERAERMARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>msr8478 [L] COG0776 Bacterial nucleoid DNA-binding protein Mlo
          Mesorhizobium loti
          Length = 90

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 1  LVGFGSFSTGKRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAVN 47
          LVGFG+F+  KRAA TGRNPQTG E+KI A T  KFSAGK  K+AVN
Sbjct: 44 LVGFGNFTVSKRAASTGRNPQTGAEVKIPARTVPKFSAGKGLKDAVN 90


>hupB [L] COG0776 Bacterial nucleoid DNA-binding protein Eco
          Escherichia coli K12
          Length = 90

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 38/47 (80%)

Query: 1  LVGFGSFSTGKRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAVN 47
          LVGFG+F+  +RAARTGRNPQTG+EI IAAA    F AGKA K+AVN
Sbjct: 44 LVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90


>ZhupB [L] COG0776 Bacterial nucleoid DNA-binding protein EcZ
          Escherichia coli O157:H7 EDL933
          Length = 90

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 38/47 (80%)

Query: 1  LVGFGSFSTGKRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAVN 47
          LVGFG+F+  +RAARTGRNPQTG+EI IAAA    F AGKA K+AVN
Sbjct: 44 LVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90