BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0168.p (397 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2262 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 279 9e-75 PA5084 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) P... 275 2e-73 BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 250 3e-66 YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 242 1e-63 mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 240 4e-63 >RSc2262 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Rso Ralstonia solanacearum Length = 425 Score = 279 bits (713), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 178/404 (44%), Positives = 230/404 (56%), Gaps = 27/404 (6%) Query: 1 MGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSVWTKWA 60 +GAG++G++TAY L Q+GHQV+L++ PGEGTS NG QLSYSYVAPLA P V + Sbjct: 6 VGAGIVGISTAYALAQEGHQVTLVERNPGPGEGTSYANGGQLSYSYVAPLAGPGVLSHVP 65 Query: 61 YYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLTQWNAG 120 +L +DSPL ++P+ D RW + F+ CN +R +TT +LL L+FYSR ++ A Sbjct: 66 GWLLRRDSPLRLKPSLDPVLLRWGLRFIAACNRERADRTTRELLALSFYSRARMEALRAA 125 Query: 121 L-QLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALGHSQR 179 LSF R GKLV++ DA +A QV +Q+ GC+Q L A E I EPAL ++ Sbjct: 126 SPDLSFSFARRGKLVVYRDAAAFASARAQVGYQATLGCEQHALSADETIAREPALAGARG 185 Query: 180 DWVGGVYTPSEEAGDCPQFCRALVASMQAHPN--FRFIGGARISEVRREGHALRAVQAGG 237 VG +YTP E+ DC Q C L + A PN RF GA V EG +R V+ Sbjct: 186 AIVGAIYTPDEDVADCHQLCVGLFNRLCALPNVALRFNAGAESLWV--EGRRVRGVRTAH 243 Query: 238 EWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPL-EDDASRTAAPQVSITDIA 296 E I AD V+A G S L + LYPLKGYSI++PL E A AP VS+TD A Sbjct: 244 EPITADAVVVAAGVASAGLLGPLRIDPGLYPLKGYSISLPLGEGGAGSDGAPVVSVTDAA 303 Query: 297 RKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDATR------ 350 RKIVYAR+G+ LRVAG +LVG + P ++ L + R LFP DA Sbjct: 304 RKIVYARIGRTLRVAGMADLVGWSDRLDPRRVQTLYDETRALFPAALRASDAGADAAPWA 363 Query: 351 ---------------SPVENLHFNIGQGALGWTLACGSAALVAD 379 SPV+ L N+G GALG+TLA GSA L+AD Sbjct: 364 GMRPATPTGVPVVGPSPVDGLWLNVGHGALGFTLAMGSAGLLAD 407 >PA5084 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Pae Pseudomonas aeruginosa Length = 416 Score = 275 bits (702), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 181/416 (43%), Positives = 238/416 (57%), Gaps = 30/416 (7%) Query: 1 MGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSVWTKWA 60 +GAGV+G+ TAY L+++G V+L++AR++ G TS NG QLSY YVAPLAD V + Sbjct: 8 IGAGVVGLATAYALVREGFDVTLVEARERGGLETSYANGGQLSYRYVAPLADSGVPAQAL 67 Query: 61 YYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLTQWNA- 119 +L D+PL +RP D Q+RWL+ FL C R+ LL+LA S+ L W Sbjct: 68 GWLLRNDAPLRLRPRLDPAQWRWLLGFLAACRGSLNRRNAAHLLRLALLSQRTLQDWREE 127 Query: 120 -GLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALGHSQ 178 GL FD +R+GKLV F A Q + S Q VL AAEC+ +EPAL S Sbjct: 128 DGLD-GFDWRRNGKLVAFRQPASFARARQGLADPS----AQFVLTAAECLALEPAL--SA 180 Query: 179 RDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQAGGE 238 +VGG++TP EE DC FC L +QA + R + G R++++ G A+R V+ GG+ Sbjct: 181 APFVGGIHTPDEEVADCHAFCVQLAERLQASGHCRQLHGRRVTKIVEGGAAVRGVEVGGD 240 Query: 239 WIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDIARK 298 I AD VLA G S E L LRLPLYPLKGYS+T+P+ ++ AP SITD RK Sbjct: 241 LIEADHVVLAAGYRSAELM-LPGLRLPLYPLKGYSLTLPV---GAQHRAPDTSITDYDRK 296 Query: 299 IVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGC----ALGEDATRSPV- 353 IVYAR+G+RLR+A +++VG D + PA + LR R+ FP A E A P Sbjct: 297 IVYARIGERLRIAAMVDIVGFDPGLEPARLALLRQQARDTFPQGGDFDAAVEWAGMRPAT 356 Query: 354 ------------ENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAFQYRG 397 NL N+G GALG+TLACGS L+A+QI R +ID T RG Sbjct: 357 PTGVPLVGNGGYRNLWLNLGHGALGFTLACGSGRLLAEQIGRRPPSIDTTGLLPRG 412 >BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme Brucella melitensis Length = 416 Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/405 (36%), Positives = 218/405 (53%), Gaps = 22/405 (5%) Query: 1 MGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSVWTKWA 60 +G+GVIGVTTAY L + GH+V++ID + P TS N Q+S Y +P A P + K A Sbjct: 6 LGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIPLKAA 65 Query: 61 YYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLTQWNAG 120 +LF K +PL +R T D QYRWL++ L C R + ++++A YSRD L + Sbjct: 66 KWLFQKHAPLILRLTTDPVQYRWLLQMLANCTDSRYKINKTRMVRVAEYSRDCLIELRKD 125 Query: 121 LQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALGHSQRD 180 + +D + G L +F + L+ + ++ Q G EVL C+ +EPAL H++ Sbjct: 126 TGIEYDQRSQGTLQLFREQYQLDGIGKDIEVLRQDGVPFEVLDRDGCVNVEPALAHAKDK 185 Query: 181 WVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQAGGEWI 240 +VGG+ P++E GDC +F AL A + +F G I + G + V+ + Sbjct: 186 FVGGLRLPNDETGDCFKFTNAL-AKIAEGLGVKFRFGVNIKSLLMSGGKISGVETSEGIV 244 Query: 241 AADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDIARKIV 300 A+R+V+ALG+ + + L L P+YP+KGYSIT P+ D++ AP ++ D + KI Sbjct: 245 TAERYVVALGSYTPALIKALGLNAPIYPVKGYSITAPIVDESR---APVSTVLDESYKIA 301 Query: 301 YARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDAT----------- 349 RLG R+RV G E+ G +P A L + +LFPG L + AT Sbjct: 302 ITRLGDRIRVGGMAEVSGFTDDLPAARRATLDLSVTDLFPGGDL-KAATFWSGLRPMTPD 360 Query: 350 RSPV------ENLHFNIGQGALGWTLACGSAALVADQIAGRRRAI 388 +P+ +NL N G G LGWT+ACGS L+AD I+G + I Sbjct: 361 STPIIGGTRYDNLFINAGHGTLGWTMACGSGRLLADLISGNKADI 405 >YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype Yersinia pestis Length = 434 Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 216/416 (51%), Gaps = 25/416 (6%) Query: 1 MGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSVWTKWA 60 +G+GV+GVT+A+ L ++GH V++ID + P + TS GN Q+S Y AP A P V K Sbjct: 6 LGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVPLKAI 65 Query: 61 YYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLTQWNAG 120 ++F + +PL IR Q RW+ + LR C+ +++LA YSRD L A Sbjct: 66 KWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKDLRAA 125 Query: 121 LQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALGHSQRD 180 + ++ ++ G L +F Q + AA+ + G +L A + +EPAL Sbjct: 126 TGIQYEGRQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALAKVAHK 185 Query: 181 WVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQAGGEWI 240 GG+ P++E GDC F L A M +FI + ++ EG + V G + I Sbjct: 186 LTGGLRLPNDETGDCKLFTERL-AKMAEQAGVKFIFNRSVDKLLVEGDQIAGVLCGDDII 244 Query: 241 AADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDIARKIV 300 AD +V+A GA S L + +P+YPLKGYS+T+P+ D AS AP ++ D KI Sbjct: 245 KADAYVVAFGAYSTALLAGL-VSIPVYPLKGYSLTIPITDPAS---APFSTVLDETYKIA 300 Query: 301 YARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCA-------------LGED 347 R R+RV G E+VG + + PA E L +R+L+P + D Sbjct: 301 ITRFDDRIRVGGMAEIVGFNTQLAPARRETLEMVVRDLYPHGGDISQAVFWSGLRPMTPD 360 Query: 348 AT----RSPVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAI---DDTAFQYR 396 T R+P++NL+ N G G LGWT+ACGS L+AD I GRR AI D + +YR Sbjct: 361 GTPIVGRTPLKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLSVARYR 416 >mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 418 Score = 240 bits (613), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 208/410 (50%), Gaps = 21/410 (5%) Query: 1 MGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSVWTKWA 60 +G GVIGVTTAY L + GH+V+++D ++ P TS N ++S Y +P A P + K Sbjct: 6 LGGGVIGVTTAYYLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGIPLKAI 65 Query: 61 YYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLTQWNAG 120 +L K PL +RP D + WLV+ LR C +R ++ LA YSRD L Sbjct: 66 KWLLMKHGPLVVRPAFDPHMWTWLVKMLRNCTTERYAINKSRMVPLAEYSRDTLKALREA 125 Query: 121 LQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALGHSQRD 180 +++D + G L +F + L+ V+ +YG E+L CI EPALG + Sbjct: 126 TGITYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVSYEILDQDGCIAAEPALGGVREK 185 Query: 181 WVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQAGGEWI 240 +VGG+ P +E GDC F L A + +F I V R + + + + Sbjct: 186 FVGGLRLPHDETGDCKMFTEKL-AELCVARGVKFEYDTTIWRVLRSRNRVANLSTSKGFK 244 Query: 241 AADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDIARKIV 300 A++ +V+ALG+ S F R + +P+YP+KGYSITVP++D AP ++ D K+ Sbjct: 245 ASEAYVMALGSYSAGFMRRMKRSIPVYPVKGYSITVPIKDA---DVAPVSTVMDETYKVA 301 Query: 301 YARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDAT----------- 349 RLG R+RV G E+ G D + + L + + +LFPG +AT Sbjct: 302 ITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMREATFWCGLRPMTPD 361 Query: 350 ------RSPVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAF 393 R+ + NL N G G LGWT+ACGSA ++AD ++ + ID A Sbjct: 362 GPPLIGRTELSNLFLNTGHGTLGWTMACGSAKVLADIMSNKVPEIDARAL 411