BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0138.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04361 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 222 5e-58 SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 72 7e-13 AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaci... 69 6e-12 SMa1652 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 66 6e-11 mll8441 Non COG 64 2e-10 >SMc04361 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 219 Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 123/216 (56%), Positives = 151/216 (69%), Gaps = 6/216 (2%) Query: 3 HILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIVNAVELAAAGAEVERNW 62 H+LLINPNSSQAT+EMMV+IA+ + A++ TAR+ P MI+ ELAAA EV Sbjct: 4 HLLLINPNSSQATSEMMVSIAQKAANGRLAVASATARRSPRMILKPDELAAAADEV---V 60 Query: 63 REGGRHSVGC---IISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTPE 119 G RH GC I+SAFGDPG+ LR G PV G+C+ASMLEA+ GRRFGVAT TP+ Sbjct: 61 EIGTRHEPGCLGIIVSAFGDPGLALLRERVGIPVVGICEASMLEASRDGRRFGVATTTPD 120 Query: 120 LADVIGEKAQQAGVGALYTGIRLTAGDPRALAADPQALEEALAQAVRACVERDGAEAVVI 179 LAD I E+A+ G+ LY+GIR T GDP A+A D + L +L AVRA V+ DGAEAV+I Sbjct: 121 LADAIAERARHLGLSHLYSGIRCTPGDPLAVAGDEERLRTSLWHAVRASVDLDGAEAVII 180 Query: 180 GGGPLGQAAMALAQRFSVPVIAPIPAAVRYLLKVLQ 215 GGGPLG+AA L F VPVI PIP+AV +L +LQ Sbjct: 181 GGGPLGKAAEQLQPLFDVPVIGPIPSAVMRVLGLLQ 216 >SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 241 Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 1/207 (0%) Query: 3 HILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIVNAVELAAAGAEVERNW 62 HI LINPNS+ + T + A A +S P I + A + + Sbjct: 2 HIHLINPNSTASMTAQALESALLVKHAHTHVSASNPTDTPASIEGGADEAMSVPGMLAEI 61 Query: 63 REGGRHSVGC-IISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTPELA 121 R+G V +I+ F DPG+ R + PV G+CQA++ A RRF V T P Sbjct: 62 RQGEAQGVDAYVIACFDDPGLHAAREVAKGPVIGICQAAVQVAMTISRRFSVITTLPRSV 121 Query: 122 DVIGEKAQQAGVGALYTGIRLTAGDPRALAADPQALEEALAQAVRACVERDGAEAVVIGG 181 +I + G +R AL DPQ E L + + DGAEA+V+G Sbjct: 122 PIIEDLVSDYGAERHCRKVRAIDLPVLALEEDPQRAERLLLKEIEIAKAEDGAEAIVLGC 181 Query: 182 GPLGQAAMALAQRFSVPVIAPIPAAVR 208 + L + VPVI + AAV+ Sbjct: 182 AGMSSLCDRLQKATGVPVIDGVTAAVK 208 >AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 1/207 (0%) Query: 3 HILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIVNAVELAAAGAEVERNW 62 HI LINPNS+ + T + A +S P I + A A + Sbjct: 5 HIRLINPNSTASMTAQALDSALRVKQKDTHVSAANPVDTPVSIEGQADEAMAVPGLLAEI 64 Query: 63 REGGRHSVGC-IISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTPELA 121 R+G H V +I+ F DPG+ R + PV G+CQA++ A RRF + T P Sbjct: 65 RKGEGHGVDAYVIACFDDPGLHAAREVARGPVIGICQAAVQVAMTISRRFSIITTLPRSI 124 Query: 122 DVIGEKAQQAGVGALYTGIRLTAGDPRALAADPQALEEALAQAVRACVERDGAEAVVIGG 181 +I + + G +R L DP+ E L + + A D AEA+++G Sbjct: 125 PIIEDLVEDYGAQRYCRKVRAIDLPVLGLEEDPEVAEALLRREIEAAKREDAAEAIILGC 184 Query: 182 GPLGQAAMALAQRFSVPVIAPIPAAVR 208 + L VPVI + AA++ Sbjct: 185 AGMSSLCDRLRDATGVPVIDGVTAAIK 211 >SMa1652 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 261 Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 4 ILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIV----NAVELAAAGAEVE 59 I LINPN++ A TE+M ART AG + T+R G I A+ + E+ Sbjct: 3 IKLINPNTTSAMTELMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIA 62 Query: 60 RNWREGGRHSVGCIISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTPE 119 R G+ + II FGDPG+ R + PV G+ +++M A F + T T E Sbjct: 63 R-----GKPADAYIIGCFGDPGLLAAREITASPVLGVAESAMHAATFVATSFSIIT-TLE 116 Query: 120 LADVIGEK-AQQAGVGALYTGIRLTAGDPRALAADPQALEEA-LAQAVRACVERDGAEAV 177 +I E+ + G+ +R T L + A LA+ +A +E D A+A+ Sbjct: 117 RTRIISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIE-DRAQAI 175 Query: 178 VIGGGPLGQAAMALAQRFSVPVIAPIPAAVRY 209 V+G + L R VPVI + AAV++ Sbjct: 176 VLGCAGMSNLVERLQHRLGVPVIDGVAAAVKF 207 >mll8441 Non COG Length = 250 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 20/216 (9%) Query: 3 HILLINPNSSQATTEMMVAIARTSLPAGYALSGVTARQGPEMIVNAVE--LAAAG--AEV 58 IL++NPN++ + TE + A AR A + VT+ GP+ I + LA G E+ Sbjct: 4 QILVVNPNTTASMTETIGAAARAVAGAWTEIIAVTSSTGPDSIEGYYDEALAVPGLLMEI 63 Query: 59 ERNWREGGRHSVGCIISAFGDPGIERLRALDGRPVAGLCQASMLEAAEGGRRFGVATVTP 118 R G + +V I+ F D G++ RA+ PV G+C+A++ A+ +RF V T T Sbjct: 64 AAGERRGAQAAV---IACFDDTGLDAARAMANIPVIGICEAALSMASFIAQRFTVVTTTE 120 Query: 119 ELADVIGEKAQQAGVGALYTGIRLTAGDPRALA-ADPQA-----LEEALAQAVRACVERD 172 + Q+ G+ R+ A D LA DP + L + +A+A VE D Sbjct: 121 RSRVPVEGLVQRYGMAGR---ARVRAADIPVLALEDPASGATGKLRDEIARA----VEED 173 Query: 173 GAEAVVIGGGPLGQAAMALAQRFSVPVIAPIPAAVR 208 AEA+V+G + A L F +PVI + AA++ Sbjct: 174 RAEAIVLGCAGMADLAHQLQADFGLPVIDGVGAAIK 209