BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0127.p         (135 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all5046 [U] COG0848 Biopolymer transport protein Nos Nostoc sp. ...    70   1e-12
aq_1839 [U] COG0848 Biopolymer transport protein Aae Aquifex aeo...    59   3e-09

>all5046 [U] COG0848 Biopolymer transport protein Nos Nostoc sp. PCC 7120
          Length = 134

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 1   MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60
           MR  DEP    A++ I+PMIDV+  +L FF++ +L +  + GL   LP ++TA+  +   
Sbjct: 1   MRLQDEPDI-PAQINIVPMIDVIFAILTFFIMSTLFLTRSEGLPVNLPKAATAKQQQVPA 59

Query: 61  KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120
           K  IT+ ++ V+ ++ +   +DA+  +L  L    ++  ++IN+D  V   ++V +MD +
Sbjct: 60  KITITVDEQGVVSLNRQPILVDAVAGQLRNLVGTNQEALVVINADEKVGHGKVVAIMDQV 119

Query: 121 KKGGFDSISIATRK 134
           ++     ++IAT+K
Sbjct: 120 RQVQGAKLAIATQK 133


>aq_1839 [U] COG0848 Biopolymer transport protein Aae Aquifex aeolicus
          Length = 132

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 1   MRSWDEPKKRKARVEIIPMIDVMMFLLVFFVLISLNVIPALGLKTQLPSSSTAQDLKPQT 60
           +RS +E  K  + + +IP++D+M+ LL   VL +   I    +  +LP + + + ++PQ 
Sbjct: 4   VRSMEE--KEISSMNVIPLVDIMLVLLTI-VLTTATFIAKGEIPVELPEAKSGKAVQPQE 60

Query: 61  KAVITIAKEDVIQVDGENTTLDALTARLDKLRKDGEKLNLIINSDRGVEVQRLVDVMDTL 120
             VITI KE  I +     + + L   L  L +      + IN+D+  +++  V V D L
Sbjct: 61  SVVITITKEGKIYLKSREVSYEELKEFLKTLNRQTP---VEINADKNAKLENFVKVFDLL 117

Query: 121 KKGGFDSISIATRKQ 135
            + GF ++++  +K+
Sbjct: 118 NQYGFKNVNLLVKKE 132