BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0083.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...   250   2e-66
mlr5690 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...   246   3e-65
RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...    77   2e-14
CC1664 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    77   3e-14
mlr2892 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    69   6e-12

>PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 210

 Score =  250 bits (638), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 158/210 (75%)

Query: 1   MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60
           M+  R P IS RK PQQARS+ELVA+ILEAAVQVL  EGA RFTTARVAERAGVS+GS+Y
Sbjct: 1   MSDKRNPRISSRKQPQQARSSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLY 60

Query: 61  QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120
           QYFPNKAAILFRLQ+DEW++TT ++ ++L++T +PP  RLR LV AF+RSE EEA +R+A
Sbjct: 61  QYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLERLRRLVLAFVRSECEEAAIRVA 120

Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180
           L+DAAPLYRDA EA E++ +   +   F+REALP V+   R  AG+L+ TTL   G+  S
Sbjct: 121 LSDAAPLYRDADEAREVKAEGARVFQAFLREALPEVAEAERSLAGDLLTTTLGAVGKQFS 180

Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSLQPR 210
                E EI  Y EA+ADM CAYL +L  R
Sbjct: 181 EQPRSEAEIERYAEALADMLCAYLAALGER 210


>mlr5690 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 211

 Score =  246 bits (627), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/210 (62%), Positives = 153/210 (72%)

Query: 1   MNKPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVY 60
           M     P IS RK P+QAR+T+LVAAIL+AAVQVL  EGA RFTT RVAE+AGVSVGS+Y
Sbjct: 1   MTGRSSPLISSRKQPKQARATDLVAAILQAAVQVLETEGAQRFTTTRVAEKAGVSVGSLY 60

Query: 61  QYFPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQVRMA 120
           QYFPNKAA+LFRLQ+DEWQQTT+++ ++LQE +KPP  RLR LVHAF+RSE EEA VR A
Sbjct: 61  QYFPNKAALLFRLQSDEWQQTTDLLCRILQEVEKPPLERLRILVHAFVRSECEEAAVRGA 120

Query: 121 LADAAPLYRDAREAEEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGEHLS 180
           L DAAPLYRDA EA+E R   +  +  FMRE LP      R  AGEL+MT L+ AG   S
Sbjct: 121 LDDAAPLYRDAPEAQEARASAERTVEIFMRETLPQAEDATRALAGELVMTMLSAAGRDFS 180

Query: 181 RGTLPEKEIRAYGEAMADMFCAYLDSLQPR 210
                  EI  Y +A+ADMFCAYL SL  R
Sbjct: 181 ASPRIPAEIETYSDAIADMFCAYLRSLGHR 210


>RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 3   KPRRPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVYQY 62
           K  R  +  RK P Q RS   V AI++AA  +L++ G  R TT  +AERAGV++GS+YQY
Sbjct: 2   KTARTPVKPRKLPTQERSRATVDAIMQAATYILVKFGWERLTTNAIAERAGVNIGSLYQY 61

Query: 63  FPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRSEFEEAQV 117
           FPNK AI+  LQ     QT E++ + L +  +   R LRE +   + +  +E +V
Sbjct: 62  FPNKQAIIAELQRRHVLQTREILSKALPQVSE--QRSLREALTLLVVAMIDEHRV 114


>CC1664 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 210

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 6   RPEISLRKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVYQYFPN 65
           +P   +RK+P+Q+RS + VA ILEAA ++L  +G   FTT  VA+RAGVS+G++Y+Y+P+
Sbjct: 13  KPVEKVRKSPRQSRSRDSVACILEAAARILEAKGEAGFTTNAVAQRAGVSIGTLYRYYPD 72

Query: 66  KAAILFRLQADEWQQTTEMVRQLLQETDKPPARRLRELVHAFLRS 110
           K AIL  L   E +   + V  +     +P   R R L+ AF+++
Sbjct: 73  KQAILLALAERETEAHRQAV--IAVTAGEPSVARDRALIRAFVQA 115


>mlr2892 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 217

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 5   RRPEISL--RKTPQQARSTELVAAILEAAVQVLLREGAPRFTTARVAERAGVSVGSVYQY 62
           R+  I+L  RK P+Q RS+++V  IL+AA+ +   +G    TT  +A+RAG+SVGSVYQY
Sbjct: 7   RKTRIALEPRKQPRQQRSSKVVDRILDAALILTREQGTRTPTTLAIAQRAGLSVGSVYQY 66

Query: 63  FPNKAAILFRLQADEWQQTTEMVRQLLQETDKPPARR--LRELVHAFL--RSEFEEAQVR 118
           FPNK AIL  L A  W  +   V +   +  +P  R    RE+   F+   S + E    
Sbjct: 67  FPNKEAILLDL-ARRWLSSFPEVIERRIKVPRPTNREEFRREVRKLFIDTSSIYLENATL 125

Query: 119 MALADAAPLYRDAREA-EEMRHDWDGIIAQFMREALPGVSAPRRKRAGELMMTTLTTAGE 177
           M + +A     D R   +E       + A ++R   P +     KR G +MM        
Sbjct: 126 MPVIEAISGNADLRPIQDEYDEQIIALYAAWLRHVNPALEDKIAKRLGLVMMEV-----G 180

Query: 178 HLSRGTLPEKEIRAYGEAMADMFCAYLDSLQP 209
           H  R    +++ R Y     D+   +L  + P
Sbjct: 181 HACRLVGLKRDRRTYNLIEDDVEAMWLALVNP 212