BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0042.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1636 [K] COG1396 Predicted transcriptional regulators Mlo Mes...   109   3e-24
mlr2155 [K] COG1396 Predicted transcriptional regulators Mlo Mes...   101   8e-22
Cgl1319 [K] COG1396 Predicted transcriptional regulators Cgl Cor...    92   9e-19
PA1263 [K] COG1396 Predicted transcriptional regulators Pae Pseu...    90   3e-18
Cgl0484 [K] COG1396 Predicted transcriptional regulators Cgl Cor...    86   5e-17

>mll1636 [K] COG1396 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 290

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 6/164 (3%)

Query: 4   DLARRALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQG 63
           D  RR LG FL+S+RE+  P+  G+      RRRTPGLRREEVA + G+  TWYTW+EQG
Sbjct: 10  DSRRRELGAFLRSRRERLTPSATGIS--TGLRRRTPGLRREEVAMIAGVGTTWYTWLEQG 67

Query: 64  RTDSVSPQALARIADALHLPRAKRAYLFELAGKKDPVLPEQQAATVVAPEILEVVSQFRA 123
           R    S + L  ++ AL L  A++ +LF LAG++ P      A  V  P +  + S    
Sbjct: 68  RDVRPSVEVLTALSGALRLDAAEKRHLFTLAGRQLPERRRIAAGKVEGPLLHMLQSLVLQ 127

Query: 124 PAYLLDRYWNAVAWNPAARKLFA--GWLDGKEKPPNLLRFMFSS 165
           PAY++   W+ +AWN AA  +F   G L+G  +  N++  +F+ 
Sbjct: 128 PAYVVGPRWDVLAWNDAAVAIFGDYGQLEGDAR--NIIHGVFTD 169


>mlr2155 [K] COG1396 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 276

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 6/156 (3%)

Query: 9   ALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTDSV 68
           +L  FLK +R +  PA  G      GRRRTPGLRREEVAQ   IS TWYTW+EQGR  + 
Sbjct: 10  SLAAFLKDRRTRLDPASFGF----SGRRRTPGLRREEVAQRANISPTWYTWLEQGRGGAP 65

Query: 69  SPQALARIADALHLPRAKRAYLFELAGKKDPVLPEQQAATVVAPEILEVVSQFRA-PAYL 127
           S   L RIA  L L  A+R +LF L   + P +   +    V+P +  ++    A PA +
Sbjct: 66  SADVLNRIAKGLLLTEAEREHLFMLGLGRPPEV-RYRGDEGVSPRLQRLIDTLEASPALV 124

Query: 128 LDRYWNAVAWNPAARKLFAGWLDGKEKPPNLLRFMF 163
               W+ VAWN AA  +   +        N+LRFMF
Sbjct: 125 KTATWDVVAWNRAAEIVLTDYGTIPAGRRNILRFMF 160


>Cgl1319 [K] COG1396 Predicted transcriptional regulators Cgl
           Corynebacterium glutamicum
          Length = 325

 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 12  DFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTDSVSPQ 71
           +FL ++R +  P  AGLP +  G+RR PGLRREEVA L G+SV +YT +E+G    VS Q
Sbjct: 31  EFLTARRNRLTPKDAGLP-IYQGKRRVPGLRREEVAMLAGVSVDYYTRLERGNLSGVSEQ 89

Query: 72  ALARIADALHLPRAKRAYLFELAGKKDPVLPEQQAA----TVVAPEILEVV-SQFRAPAY 126
            L+ +A AL L  A+  +LF+LA   +     ++      +V+ PE+L ++ S    PAY
Sbjct: 90  VLSALATALQLDDAETQHLFDLAKLSNSPASRRKRTPAPKSVLRPEVLRILNSMHDIPAY 149

Query: 127 LLDRYWNAVAWNPAARKLFAGWL-----DGKEKPP---NLLRFMF 163
           +     + +A N   R L+A        DG    P   N+ RF F
Sbjct: 150 IRSESRDLLAANTFGRALYAPLYESTVSDGISGEPGSINVARFTF 194


>PA1263 [K] COG1396 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 314

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 57/91 (62%), Gaps = 2/91 (2%)

Query: 10  LGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTDSVS 69
           LG FL+ +RE   P + G+  L  GRRRTPGLRREEVAQL G+ VTWYTW+EQGR    S
Sbjct: 50  LGAFLRRRRESIEPQRVGISRL--GRRRTPGLRREEVAQLAGVGVTWYTWLEQGRAVRAS 107

Query: 70  PQALARIADALHLPRAKRAYLFELAGKKDPV 100
            Q +  IA AL     +  +LF LAG   P 
Sbjct: 108 EQVIGAIARALLCNETETHHLFNLAGLAAPT 138


>Cgl0484 [K] COG1396 Predicted transcriptional regulators Cgl
           Corynebacterium glutamicum
          Length = 260

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 4   DLARRALGDFLKSQREQTAPAQAGLPHLAHGRRRTPGLRREEVAQLCGISVTWYTWIEQG 63
           +L ++ + DFL ++R +  PA AGL       RR PGLRREEVA L GIS+ +Y   E+G
Sbjct: 3   ELLKQEVKDFLTTRRARITPAAAGLETQPWSDRRVPGLRREEVADLAGISLEYYIRFERG 62

Query: 64  RTDSVSPQALARIADALHLPRAKRAYLFELAGKKDP--VLPEQQAATVVAPEILEVVSQF 121
                SP+ L  +A AL L   +R +L  LA + D    LP  +  T    +I++ V+  
Sbjct: 63  NLKGASPEILQSLAKALQLSPIEREHLHNLAYRADHPRNLPSAETPTAPLQDIVDAVTD- 121

Query: 122 RAPAYLLDRYWNAVAWNPAARKLFAGWLDGKEKPPNLLRFMFSSGXAGRAIIDGGMGTTG 181
             PA++ +   + +A N    +L+A         PN  R  F    A    +D    +  
Sbjct: 122 -KPAWIRNEQMDILATNRLCAELYAPIFKDLPDRPNTARHCFIGATASEFWVDRDQFSAE 180

Query: 182 AAAGGRI 188
            AA  R+
Sbjct: 181 FAAKLRL 187