BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0015.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1074 [E] COG0683 ABC-type branched-chain amino acid transport ...    63   2e-10

>PA1074 [E] COG0683 ABC-type branched-chain amino acid transport systems,
          periplasmic component Pae Pseudomonas aeruginosa
          Length = 373

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 4/62 (6%)

Query: 2  KFASRLTKI--ALAAATFAAFAGVAHAETVKIAIAGPLTGAVAQYGDMVKAGALTAIEQI 59
          K   RL+++  A+A A FA+++    A+T+KIA+AGP+TG VAQYGDM +AGAL AIEQI
Sbjct: 3  KGTQRLSRLFAAMAIAGFASYS--MAADTIKIALAGPVTGPVAQYGDMQRAGALMAIEQI 60

Query: 60 KK 61
           K
Sbjct: 61 NK 62