BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0011.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ...   155   3e-38
STM3561 [E] COG0411 ABC-type branched-chain amino acid transport...   137   6e-33
livG [E] COG0411 ABC-type branched-chain amino acid transport sy...   130   6e-31
ZlivG [E] COG0411 ABC-type branched-chain amino acid transport s...   130   6e-31
ECs4302 [E] COG0411 ABC-type branched-chain amino acid transport...   130   6e-31

>PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Pae Pseudomonas aeruginosa
          Length = 255

 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 89/104 (85%)

Query: 6   KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65
           + +LEVS L+MRFGGLLAV+GV+L V+E++V ++IGPNGAGKTTVFNC++GFYQPT G I
Sbjct: 3   RPILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLI 62

Query: 66  ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109
            LDG  I   P H++A++G+VRTFQN+RLFK MT VENLLVAQH
Sbjct: 63  RLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQH 106


>STM3561 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Sty Salmonella typhimurium LT2
          Length = 255

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 82/102 (80%)

Query: 8   MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEIAL 67
           +L V+ L MRFGGLLAV+ VSL ++ERE+ ++IGPNGAGKTTVFNC++GFY+PT G I L
Sbjct: 5   LLAVNGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTITL 64

Query: 68  DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109
               +   P  Q+A+ G+VRTFQ++RLF+ MTV+ENLLVAQH
Sbjct: 65  RERHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106


>livG [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 255

 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 81/104 (77%)

Query: 6   KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65
           + +L V+ L MRFGGLLAV+ V+L +  +E+ ++IGPNGAGKTTVFNC++GFY+PT G I
Sbjct: 3   QPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 66  ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109
            L    +   P  Q+A+ G+VRTFQ++RLF+ MTV+ENLLVAQH
Sbjct: 63  LLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106


>ZlivG [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 255

 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 81/104 (77%)

Query: 6   KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65
           + +L V+ L MRFGGLLAV+ V+L +  +E+ ++IGPNGAGKTTVFNC++GFY+PT G I
Sbjct: 3   QPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 66  ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109
            L    +   P  Q+A+ G+VRTFQ++RLF+ MTV+ENLLVAQH
Sbjct: 63  LLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106


>ECs4302 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Ecs Escherichia coli O157:H7
          Length = 255

 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 81/104 (77%)

Query: 6   KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65
           + +L V+ L MRFGGLLAV+ V+L +  +E+ ++IGPNGAGKTTVFNC++GFY+PT G I
Sbjct: 3   QPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 66  ALDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQH 109
            L    +   P  Q+A+ G+VRTFQ++RLF+ MTV+ENLLVAQH
Sbjct: 63  LLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106