BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0010.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ...   172   2e-43
livG [E] COG0411 ABC-type branched-chain amino acid transport sy...   166   1e-41
ZlivG [E] COG0411 ABC-type branched-chain amino acid transport s...   166   1e-41
ECs4302 [E] COG0411 ABC-type branched-chain amino acid transport...   166   1e-41
STM3561 [E] COG0411 ABC-type branched-chain amino acid transport...   165   3e-41

>PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Pae Pseudomonas aeruginosa
          Length = 255

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 99/124 (79%)

Query: 1   LQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQ 60
           ++ AA+WL+++ LT  ANR AGTL+YG QRR+EIARCM+T+PR+L+LDEPAAGLNP+E  
Sbjct: 131 MEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLNPKETD 190

Query: 61  ELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKA 120
           +L  LI +LR EH V VLLIEHDM L+M ISD I+V+  G P+  GTPEQ+R +  VIKA
Sbjct: 191 DLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDNPDVIKA 250

Query: 121 YLGE 124
           YLGE
Sbjct: 251 YLGE 254


>livG [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 255

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 97/124 (78%)

Query: 1   LQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQ 60
           L RAA WL+++GL   ANR+A  L+YG QRR+EIARCM+T+P +L+LDEPAAGLNP+E +
Sbjct: 131 LDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190

Query: 61  ELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKA 120
           EL +LI  LR  H   +LLIEHDM L+MGISDRI V+  G P+  GTPEQ+R++  VI+A
Sbjct: 191 ELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRA 250

Query: 121 YLGE 124
           YLGE
Sbjct: 251 YLGE 254


>ZlivG [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 255

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 97/124 (78%)

Query: 1   LQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQ 60
           L RAA WL+++GL   ANR+A  L+YG QRR+EIARCM+T+P +L+LDEPAAGLNP+E +
Sbjct: 131 LDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190

Query: 61  ELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKA 120
           EL +LI  LR  H   +LLIEHDM L+MGISDRI V+  G P+  GTPEQ+R++  VI+A
Sbjct: 191 ELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRA 250

Query: 121 YLGE 124
           YLGE
Sbjct: 251 YLGE 254


>ECs4302 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Ecs Escherichia coli O157:H7
          Length = 255

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 97/124 (78%)

Query: 1   LQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQ 60
           L RAA WL+++GL   ANR+A  L+YG QRR+EIARCM+T+P +L+LDEPAAGLNP+E +
Sbjct: 131 LDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190

Query: 61  ELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKA 120
           EL +LI  LR  H   +LLIEHDM L+MGISDRI V+  G P+  GTPEQ+R++  VI+A
Sbjct: 191 ELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRA 250

Query: 121 YLGE 124
           YLGE
Sbjct: 251 YLGE 254


>STM3561 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Sty Salmonella typhimurium LT2
          Length = 255

 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 97/124 (78%)

Query: 1   LQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQ 60
           L RAA WL+++GL   ANR+A  L+YG QRR+EIARCM+T+P +L+LDEPAAGLNP+E +
Sbjct: 131 LDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190

Query: 61  ELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKA 120
           EL +LI  LR  H   +LLIEHDM L+MGISDRI V+  G P+  GTPE++R++  VI+A
Sbjct: 191 ELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIRA 250

Query: 121 YLGE 124
           YLGE
Sbjct: 251 YLGE 254