BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0097.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ...    82   2e-16
PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ...    65   4e-11
BH2750 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ...    60   2e-09
BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system,...    58   5e-09

>PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system,
           periplasmic component Pae Pseudomonas aeruginosa
          Length = 331

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 55/86 (63%)

Query: 1   VIVNKKFWEALPADVRSQLEGAMKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDE 60
           VI N KFW  LPAD+R +L+  M E TV  N  A++ N DA   I ASG ++++TLS  +
Sbjct: 238 VITNAKFWNGLPADIREELQRIMDEVTVQVNLEAERLNRDARQRILASGASEIHTLSPQQ 297

Query: 61  KAEWRRALLPVHKSMASRVGQDLIDA 86
           +A+WR+A+ PV +     VG DL+ A
Sbjct: 298 RADWRQAMQPVWQKFRGNVGADLLQA 323


>PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system,
           periplasmic component Pae Pseudomonas aeruginosa
          Length = 331

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 46/86 (53%)

Query: 1   VIVNKKFWEALPADVRSQLEGAMKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDE 60
           VI N KFW  LP DVR  L   M E TV  N  A+  N      I  +  +++  L+ ++
Sbjct: 238 VITNTKFWNGLPEDVRGVLAKTMDEVTVEVNKQAEALNQGDKQRIVEAKTSEIIELTPEQ 297

Query: 61  KAEWRRALLPVHKSMASRVGQDLIDA 86
           +AEWR+A+ PV K     +G DLI A
Sbjct: 298 RAEWRKAMQPVWKKFEGEIGADLIKA 323


>BH2750 [G] COG1638 TRAP-type C4-dicarboxylate transport system,
           periplasmic component Bha Bacillus halodurans
          Length = 348

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 53/87 (60%)

Query: 1   VIVNKKFWEALPADVRSQLEGAMKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDE 60
           +++++  W+ LP + ++ +E AM E T++      + N+     +K S + +VY L+ +E
Sbjct: 256 ILMDQTVWDKLPIEYQTAIEDAMAETTMWLRDHVNELNEGIYELLKESDQIEVYELTPEE 315

Query: 61  KAEWRRALLPVHKSMASRVGQDLIDAI 87
           K +W+ A+LP+++    ++G+DL + +
Sbjct: 316 KQQWKEAVLPIYEYYERQIGEDLFEKV 342


>BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system,
           periplasmic component Bsu Bacillus subtilis
          Length = 350

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 1   VIVNKKFWEALPADVRSQLEGAMKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDE 60
           V+ ++ FW+A   + R  L  AMKE T +  T A++ N + L  IK +    +Y LS+ E
Sbjct: 257 VMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKE 316

Query: 61  KAEWRRALLPVHKSMASRVGQDLI 84
           K EW + L PV++      G++LI
Sbjct: 317 KQEWMKRLDPVYRQYEPIFGRELI 340