BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0068.p (540 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01370 [T] COG3706 Response regulator containing a CheY-like r... 139 2e-32 BH2234 [T] COG3706 Response regulator containing a CheY-like rec... 137 9e-32 PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa 135 3e-31 PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa 135 3e-31 aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus 132 2e-30 >SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Sme Sinorhizobium meliloti Length = 455 Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 3/175 (1%) Query: 356 LEQQLQQMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDT 415 L +QQ EL D LTG NRR ++ L I A R PL + + D+D FKR+NDT Sbjct: 279 LRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVNDT 338 Query: 416 HGHATGDEVLVHLVQVIRETLRKLDVIARFGGEEFVILMPETSPQDAVQIITRVQRELTK 475 HGH GD+VL +R T+R D+ RFGGEEFV++MP+T+P+ A + R++ + Sbjct: 339 HGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVES 398 Query: 476 RIF--MHESQRLLITFSAGVSVYHP-GESQAELLKRTDVALYKAKNAGKNRIVFA 527 R F + L +T S G++ P G++ LLKR D+ALY+AKN G+NR+V A Sbjct: 399 RGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVAA 453 >BH2234 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Bha Bacillus halodurans Length = 314 Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 119/197 (60%), Gaps = 5/197 (2%) Query: 329 QEEATRSRDAMVDARQEVEKAEERIQALEQQLQQMGELVREDQLTGSLNRRGMDESLDRE 388 ++E++R R Q V+ EE+ + L+ ++Q++ L R D LT +NRR M E + E Sbjct: 119 KQESSRKR-----LEQHVKVLEEQNEKLKGKIQKVDRLSRVDFLTNLMNRRDMQEKIRAE 173 Query: 389 IANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRKLDVIARFGGE 448 I ++R +A++D+D FK INDT+GH GD VL H V ++ ++R D ++R+GGE Sbjct: 174 INRSIRHGRSFTLAIVDIDFFKNINDTYGHDCGDHVLKHFVSTLKNSVRSSDYVSRWGGE 233 Query: 449 EFVILMPETSPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGVSVYHPGESQAELLKR 508 EF++L PET ++ + ++++++ + +++ + IT + G+S Y P EL+K Sbjct: 234 EFLLLFPETKLEEGKRACEKIRQKINESPVIYKGMSISITATFGISEYRPSVRIEELIKA 293 Query: 509 TDVALYKAKNAGKNRIV 525 D ALYK K GKN++V Sbjct: 294 ADDALYKGKKTGKNQVV 310 >PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 307 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 101/158 (63%) Query: 370 DQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLV 429 D LTG+ NR MD++L RE+ A R PL V +LD+D FKR+ND +GHA GDE L + Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209 Query: 430 QVIRETLRKLDVIARFGGEEFVILMPETSPQDAVQIITRVQRELTKRIFMHESQRLLITF 489 + I++ LR +D++ RFGGEEF++L+ T Q A + R+++ + + + H + L ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRHAGEPLKLSI 269 Query: 490 SAGVSVYHPGESQAELLKRTDVALYKAKNAGKNRIVFA 527 S G + PGE +LL+R D ALY+AK G+NR+ A Sbjct: 270 SLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRCA 307 >PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 671 Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 135/257 (52%), Gaps = 10/257 (3%) Query: 280 FVDRLSAMVSTTDNYQRTIRGFSQQISQAGNI--------ADLNSVLSEIMTETQKAQEE 331 + D L + + + G + QA ++ + LN +L+ M E Q+ Q E Sbjct: 416 YTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLAS-MDEHQREQAE 474 Query: 332 ATRSRDAMVDARQE-VEKAEERIQALEQQLQQMGELVREDQLTGSLNRRGMDESLDREIA 390 + + A E V E+ +A L+ + D LTG NR + E L++E+A Sbjct: 475 HEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVA 534 Query: 391 NALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRKLDVIARFGGEEF 450 R L +A+LD+D FKRIND GH GD+VL + +R+ LR+ D IARFGGEEF Sbjct: 535 RRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEF 594 Query: 451 VILMPETSPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGVSVYHPGESQAELLKRTD 510 V+L+P TS + Q++ R++ + F + + L IT SAG++ + E+ + +R D Sbjct: 595 VVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERAD 654 Query: 511 VALYKAKNAGKNRIVFA 527 ALY+AK AG++R+ A Sbjct: 655 QALYRAKRAGRDRLEVA 671 >aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 168 Score = 132 bits (333), Expect = 2e-30, Method: Composition-based stats. Identities = 68/162 (41%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 367 VREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLV 426 ++ D LTG LNRR + L + +L ETP +A++D+D+FK+INDT+GH GD+VL Sbjct: 7 LKVDPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDKVLK 66 Query: 427 HLVQVIRETLRKLDVIARFGGEEFVILMPETSPQDAVQIITRVQRELTKRIFMHESQRLL 486 + ++I++ LR+ D + R+GGEEF+ILMP T +DAV+I+ ++++E+ + + + Sbjct: 67 EVAKIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPICWQGKEIR 126 Query: 487 ITFSAGV--SVYHPGESQAELLKRTDVALYKAKNAGKNRIVF 526 +T S GV VY+ +S E +K D LY AK GKNR+VF Sbjct: 127 VTISVGVCSDVYNGLKSPEEYIKCADEKLYLAKRTGKNRVVF 168