BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0063.p (546 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 334 4e-91 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 319 1e-86 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 319 1e-86 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 316 7e-86 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 314 3e-85 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 334 bits (856), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 185/334 (55%), Positives = 244/334 (73%), Gaps = 7/334 (2%) Query: 190 MIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLDLSRPVPVERMDEIGRTAA 249 MI + V+A LL G R++TR + E V+Q +L+ + V+ DEIGR A Sbjct: 192 MIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQG-NLTHLLEVDTQDEIGRLLA 250 Query: 250 AFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEESASSLEELTS 309 A ++ + +V+ R TD++T A+ ++A+GN DLS+RTEQQA++LEE+A+++E+LTS Sbjct: 251 ALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTS 310 Query: 310 VVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINASSRKIVDIIAVIDGIAFQ 369 V QN NA++A+ LA +AS +A++GGD V + + TM++IN SSRKIVDII VIDGIAFQ Sbjct: 311 TVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQ 370 Query: 370 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKL 429 TNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LI+DSV V +G+ Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAK 430 Query: 430 VEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQAISQMDQGTQQNAALVEEA 489 VE+AG + D+V +Q VT IV I+ +S EQS GI Q+N+AI+QMD+ TQ+NA+LVEE+ Sbjct: 431 VEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEES 490 Query: 490 AAAAQALQGQAEKLESVVAVFKLE------GRAA 517 A AAQALQ QA +L +V+ FKL GRAA Sbjct: 491 ATAAQALQDQANQLADMVSTFKLHADLSGRGRAA 524 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 319 bits (818), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 177/284 (62%), Positives = 222/284 (78%), Gaps = 5/284 (1%) Query: 231 DLSRPVPVERMDEIGRTA--AAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSA 288 DLSR + V+ D RT+ A ++ A + +VAT R + +SV A+ QIA GN DLS Sbjct: 233 DLSRVIAVDADD---RTSLLAKLKEMQASLSGIVATVRNNAESVATASAQIAQGNQDLSH 289 Query: 289 RTEQQAAALEESASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNS 348 RTEQQA+AL+E++++++EL S V N +NARQAN+LA AS +A++GG+VV QVV M Sbjct: 290 RTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKG 349 Query: 349 INASSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 408 IN S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAA Sbjct: 350 INDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAA 409 Query: 409 AKEIKELIDDSVDKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQV 468 AKEIK LI SV++V G+ LV++AGATM IV ++QRV+ IV I+ AS EQS+G++QV Sbjct: 410 AKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQV 469 Query: 469 NQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFKL 512 QA+SQMD+ TQQNAALVE++AAAA +LQGQA++L VAVFKL Sbjct: 470 GQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 233/522 (44%), Positives = 317/522 (60%), Gaps = 24/522 (4%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 +TI RL+LT+S L L +G GL L+ A E P +L L + Sbjct: 5 LTIRTRLVLTVSILFLLALLIGVAGLLGLRDANGAHEETYRNQFPSALALGESDLSLTRA 64 Query: 61 RLAGYRLSVFANLPDKTALQKAVDASNKALDDEFAHYERDLIF---DEKDRALIQADKAN 117 R A + ++ DK A+Q +D + + + A +++ L DE+ R Sbjct: 65 RTALDKAMLYPE--DKDAMQ-LLDRTEELITGSDAAWKKYLALPHGDEETRL-----SKE 116 Query: 118 IEAYRKALVPFFAAAYANDMDGVRATLQAGTPLAVSAAAAKKGFED----HILVGRQMID 173 + R+A AA D+ A+ K F + +G+Q + Sbjct: 117 VGTKREA-----AAGSLRDIIKALRASDRAAADAIMDKRVSKSFREANDASQALGKQQLT 171 Query: 174 TVK---QESDAAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTL 230 K +S AY +IA IV+A++++ LR++ L F+ ++ Sbjct: 172 FSKANFDDSQQAYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAG- 230 Query: 231 DLSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSART 290 DL++PV ++R DE+G ++ A + D V R ++S+ A +QIAAGNADLS RT Sbjct: 231 DLTQPVRIDRRDEMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRT 290 Query: 291 EQQAAALEESASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSIN 350 E QA++LEE+ASS+EE+TS+V QN NARQA++LA SAS +ASQGG VV VV TM I+ Sbjct: 291 EGQASSLEETASSMEEMTSIVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREIS 350 Query: 351 ASSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 410 ASSR + +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAK Sbjct: 351 ASSRTVSEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAK 410 Query: 411 EIKELIDDSVDKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQ 470 EIKE+I+ S+ KV +GSKL EQAG+TM +IV S++RVT I+G IA AS EQS+GI QVN+ Sbjct: 411 EIKEMIEASLAKVDTGSKLAEQAGSTMENIVTSIRRVTDIMGEIAAASSEQSSGIEQVNK 470 Query: 471 AISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFKL 512 A++ MD+ TQQNAALVE+AAAAA++L+ QA+ L +A F+L Sbjct: 471 AVTLMDEATQQNAALVEQAAAAAESLEEQAQALNEAIAAFRL 512 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 316 bits (810), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 194/422 (45%), Positives = 275/422 (65%), Gaps = 6/422 (1%) Query: 91 DDEFAHYERDLIFDEKDRALIQADKANIEAYRKALVPFFAAAYANDMDGVRATLQAGTPL 150 +D F YE+ +D + K + E Y AL N M+ + P Sbjct: 102 EDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELI-----NLMETNKINEFFNHPT 156 Query: 151 AVSAAAAKKGFEDHILVGRQMIDTVKQESDAAYTFALRAMIAVIVVAVLLTGVLGIRTLR 210 ++ + +++ + D+ ++S+ +++FA+ +I V+VV +++ ++ + + Sbjct: 157 TSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQ 216 Query: 211 SVTRSLGKIQQTFEHVSQTLDLSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTSTD 270 + L + +H++ DL++ + V +E+G AA+ + + +V +V R D Sbjct: 217 ILIHPLNHLIAHIKHIANG-DLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGAD 275 Query: 271 SVTVAARQIAAGNADLSARTEQQAAALEESASSLEELTSVVLQNTQNARQANELAQSASH 330 ++ A +IA GN DLSARTEQQAA+LEE+A+S+E+LT+ V QN +NARQA++LA SAS Sbjct: 276 AIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASE 335 Query: 331 IASQGGDVVRQVVDTMNSINASSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRG 390 A +GG VV VV TM+ I SS+KI DI +VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 336 TAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRG 395 Query: 391 FAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGATMSDIVDSVQRVTQI 450 FAVVA EVR+LAQRSA AAKEIK LIDDSV++V GS LVE AG TM DIV++V RVT I Sbjct: 396 FAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDI 455 Query: 451 VGNIADASEEQSAGITQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVF 510 +G IA AS+EQS GI Q+ QA+++MD+ TQQNA+LVEE+A+AA +L+ QA L ++VF Sbjct: 456 MGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVF 515 Query: 511 KL 512 L Sbjct: 516 VL 517 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 314 bits (805), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 186/300 (62%), Positives = 235/300 (78%), Gaps = 1/300 (0%) Query: 214 RSLGKIQQTFEHV-SQTLDLSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTSTDSV 272 R L I+ + + S + DL++ +P + DE+ + A +FN ++ V+ R +DSV Sbjct: 316 RRLSMIRDAMDDIGSGSGDLTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSV 375 Query: 273 TVAARQIAAGNADLSARTEQQAAALEESASSLEELTSVVLQNTQNARQANELAQSASHIA 332 AA++IAAGNADLS RTE+QA++LEE+ASS+EELTS+V QN NARQA+ LA +AS +A Sbjct: 376 RSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVA 435 Query: 333 SQGGDVVRQVVDTMNSINASSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFA 392 ++GG VV QVV TM IN SS+KI DII VI+ IAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 436 TRGGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFA 495 Query: 393 VVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGATMSDIVDSVQRVTQIVG 452 VVASEVRSLAQRSA AAKEIK LI DSVD+V +G+ LV+QAG TM++IV++V+RVT I+G Sbjct: 496 VVASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMG 555 Query: 453 NIADASEEQSAGITQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFKL 512 I+ ASEEQS+GI QVNQA++QMDQ TQQNAALVE+AAAAA++L+ QA L V F+L Sbjct: 556 EISAASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRL 615