BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0058.p (399 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2026 [R] COG0385 Predicted Na+-dependent transporter Pae Pseud... 404 e-112 SMc04030 [R] COG0385 Predicted Na+-dependent transporter Sme Sin... 371 e-102 AGl1918 [R] COG0385 Predicted Na+-dependent transporter Atu Agro... 352 7e-97 ZyfeH [R] COG0385 Predicted Na+-dependent transporter EcZ Escher... 351 2e-96 ECs3282 [R] COG0385 Predicted Na+-dependent transporter Ecs Esch... 351 2e-96 >PA2026 [R] COG0385 Predicted Na+-dependent transporter Pae Pseudomonas aeruginosa Length = 333 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/314 (67%), Positives = 261/314 (83%), Gaps = 1/314 (0%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 M+RPRFLPDN TL L+A VL A+FLPC+GQ A F+ +T IGLLFF+HGAKLSR+A++ Sbjct: 1 MSRPRFLPDNFTLALIATVLLATFLPCSGQTAVVFEWVTNIGIGLLFFLHGAKLSRQAII 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 AG THW+LH+ V CTF +FPL+GLALKP L +TPELYLG+LFLC LP+TVQSSIAFT Sbjct: 61 AGMTHWRLHLLVFACTFVMFPLLGLALKPALSPMVTPELYLGILFLCALPATVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 S+ARGNVPAA+C+AS S+LLG+FLTPLLV +L+ A +G ++LD+I KI QLL+PF+A Sbjct: 121 SLARGNVPAAVCSASVSSLLGVFLTPLLVKLLLGA-EGETGNALDAIGKITLQLLVPFIA 179 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQ+ R +IG WVERNK L++VDQ SILLVVY AFS AV+QGLWH+VP L+ L V Sbjct: 180 GQVLRRWIGAWVERNKPVLRYVDQGSILLVVYTAFSAAVIQGLWHEVPWLALLGLTVACC 239 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 V+LA+ + LTT +RRLGF+KEDEITIVFCGSKKSLA+GVPMAKVLF++ A+G ++LP+M Sbjct: 240 VILALALVLTTVLARRLGFSKEDEITIVFCGSKKSLATGVPMAKVLFATSAVGPMVLPLM 299 Query: 301 LFHQIQLMVCAVMA 314 LFHQIQLMVCAV+A Sbjct: 300 LFHQIQLMVCAVLA 313 >SMc04030 [R] COG0385 Predicted Na+-dependent transporter Sme Sinorhizobium meliloti Length = 331 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 239/321 (74%), Gaps = 1/321 (0%) Query: 5 RFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 64 R+LPD T++L+ V A+ LP G A F T +GL+FF+HGA+LSRE V+AGF Sbjct: 3 RYLPDTFTILLMLTVALAAVLPIDGTAAAWFAIATKLGVGLIFFLHGARLSREVVIAGFL 62 Query: 65 HWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 124 HW+LH+ +L TFALFPLIGL + V + P LY G+LFLCVLPSTVQSSIAFTS+A Sbjct: 63 HWRLHIAILFSTFALFPLIGLLIGFVPPWILPPSLYTGILFLCVLPSTVQSSIAFTSMAG 122 Query: 125 GNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVAGQIA 184 GNVPAA+CAASASN+LG+FLTPLLVGV+ A GG SLD+I +I+ QLL PFVAGQI Sbjct: 123 GNVPAAVCAASASNILGVFLTPLLVGVIFSAGGHGG-VSLDAIEQILLQLLAPFVAGQIL 181 Query: 185 RPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINAVLLA 244 +P+IG W+ K L VD+ SIL+VVY+AFS+AV GLWH +S L L+ I VLLA Sbjct: 182 QPWIGDWIRARKKLLAPVDRGSILMVVYLAFSQAVTAGLWHAFTLSDLTILIAIEIVLLA 241 Query: 245 IIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQ 304 +I+ TTFGSR LGF++ DEI I FCGSKKSLASG+PMA +F+ IGM++LPVMLFHQ Sbjct: 242 LILTATTFGSRLLGFDRADEIAITFCGSKKSLASGIPMASAIFAGQNIGMIVLPVMLFHQ 301 Query: 305 IQLMVCAVMAARYGARDEQVK 325 IQLM CAV+A RY A+ +++ Sbjct: 302 IQLMACAVIAQRYAAKAAELE 322 >AGl1918 [R] COG0385 Predicted Na+-dependent transporter Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 352 bits (904), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 185/316 (58%), Positives = 239/316 (75%) Query: 5 RFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 64 RFLPD T+ML+A V+ AS LP +G+ A F T I LLFF+HGA+LSR+ V+AG Sbjct: 9 RFLPDRFTMMLVATVILASILPISGEPAVYFGLATKLAIALLFFLHGARLSRDVVIAGIL 68 Query: 65 HWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 124 HW+LH+ +LL TF LFPL+G+A+ + + LY+G+LFLCVLPSTVQSSIAFTS+A Sbjct: 69 HWRLHLVILLVTFGLFPLLGVAIGFIPESILPAPLYMGVLFLCVLPSTVQSSIAFTSMAG 128 Query: 125 GNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVAGQIA 184 GNVPAAIC+ASASN+ G+FLTPLLVG+L GG SLD+ L+I QLLLPF+ GQ Sbjct: 129 GNVPAAICSASASNIFGMFLTPLLVGLLFTVGGHGGGFSLDAFLQIFLQLLLPFIIGQAL 188 Query: 185 RPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINAVLLA 244 +P+IG W+ K L VD+ SIL+VVY+AFS+AV++G+WH + + +++IN VLLA Sbjct: 189 QPWIGEWIRARKKLLSPVDRGSILMVVYLAFSDAVIEGIWHTFSLRDIGVVILINIVLLA 248 Query: 245 IIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQ 304 I++ +T FGSR LGF+K DEITI FCGSKKSLASGVPMA +F+ +IG ++LP+MLFHQ Sbjct: 249 IVLCVTMFGSRILGFDKADEITITFCGSKKSLASGVPMAGAIFAGQSIGAIVLPIMLFHQ 308 Query: 305 IQLMVCAVMAARYGAR 320 IQLMVCAV+A RY + Sbjct: 309 IQLMVCAVLAQRYARK 324 >ZyfeH [R] COG0385 Predicted Na+-dependent transporter EcZ Escherichia coli O157:H7 EDL933 Length = 332 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/321 (59%), Positives = 245/321 (76%), Gaps = 8/321 (2%) Query: 9 DNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVVAGFTHWKL 68 D TL L+ VVL ASF P G F+ LTT I LLFFMHGAKLSREA++AG HW+L Sbjct: 8 DPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRL 67 Query: 69 HVTVLLCTFALFPLIGLAL---KPVLLQFITPELYLGLLFLCVLPSTVQSSIAFTSVARG 125 H+ V+ TF LFP++G+ KPV + P LY G L+LC+LP+TVQS+IAFTS+A G Sbjct: 68 HLWVMCSTFVLFPILGVLFAWWKPV---NVDPMLYSGFLYLCILPATVQSAIAFTSMAGG 124 Query: 126 NVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVAGQIAR 185 NV AA+C+ASAS+LLGIFL+PLLVG+++ H GG SL+ + KI+ QLLLPFV G ++R Sbjct: 125 NVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGG--SLEQVGKIMLQLLLPFVLGHLSR 182 Query: 186 PFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINAVLLAI 245 P+IG WV RNK W+ DQ+SILLVVY AFSEAVV G+WH+V L+ ++V++ VLLAI Sbjct: 183 PWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAI 242 Query: 246 IMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQI 305 ++ + F +RRLGFNK DEITIVFCGSKKSLA+G+PMA +LF + IGM++LP+M+FHQI Sbjct: 243 VIVVNVFMARRLGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQI 302 Query: 306 QLMVCAVMAARYGARDEQVKA 326 QLMVCAV+A RY + EQ++A Sbjct: 303 QLMVCAVLARRYKRQTEQLQA 323 >ECs3282 [R] COG0385 Predicted Na+-dependent transporter Ecs Escherichia coli O157:H7 Length = 332 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/321 (59%), Positives = 245/321 (76%), Gaps = 8/321 (2%) Query: 9 DNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVVAGFTHWKL 68 D TL L+ VVL ASF P G F+ LTT I LLFFMHGAKLSREA++AG HW+L Sbjct: 8 DPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRL 67 Query: 69 HVTVLLCTFALFPLIGLAL---KPVLLQFITPELYLGLLFLCVLPSTVQSSIAFTSVARG 125 H+ V+ TF LFP++G+ KPV + P LY G L+LC+LP+TVQS+IAFTS+A G Sbjct: 68 HLWVMCSTFVLFPILGVLFAWWKPV---NVDPMLYSGFLYLCILPATVQSAIAFTSMAGG 124 Query: 126 NVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVAGQIAR 185 NV AA+C+ASAS+LLGIFL+PLLVG+++ H GG SL+ + KI+ QLLLPFV G ++R Sbjct: 125 NVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGG--SLEQVGKIMLQLLLPFVLGHLSR 182 Query: 186 PFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINAVLLAI 245 P+IG WV RNK W+ DQ+SILLVVY AFSEAVV G+WH+V L+ ++V++ VLLAI Sbjct: 183 PWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAI 242 Query: 246 IMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQI 305 ++ + F +RRLGFNK DEITIVFCGSKKSLA+G+PMA +LF + IGM++LP+M+FHQI Sbjct: 243 VIVVNVFMARRLGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQI 302 Query: 306 QLMVCAVMAARYGARDEQVKA 326 QLMVCAV+A RY + EQ++A Sbjct: 303 QLMVCAVLARRYKRQTEQLQA 323