BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0024.p (364 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0157 [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 233 8e-61 SMb20036 [G] COG1638 TRAP-type C4-dicarboxylate transport system... 94 4e-19 PM1252 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 94 5e-19 yiaO [G] COG1638 TRAP-type C4-dicarboxylate transport system, pe... 91 5e-18 STM3673 [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 90 1e-17 >SMa0157 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Sme Sinorhizobium meliloti Length = 334 Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 124/325 (38%), Positives = 199/325 (61%), Gaps = 6/325 (1%) Query: 1 MTAFTRRHFLGTLAAAPLAAAMPAAWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQV 60 M++F RR + AA + A AQT LK SHQFPGG +GD RD +V++ A++V Sbjct: 1 MSSF-RRKLTTSAVAAICSLVASTAGAQTV-LKASHQFPGG---KGDIRDEMVQLIAREV 55 Query: 61 NEKTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVT 120 G L+ +++PGSSL K N Q++A+ +G LDM+ PL+YA G PE + LMPGLV Sbjct: 56 AAANVG-LEIQVFPGSSLYKPNDQWNAVTRGLLDMTSFPLDYASGRHPEFSATLMPGLVG 114 Query: 121 SYQQGAAWKNAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAKGMKVRGGS 180 ++ + ++E ++ +++ G ++++ W +G AS+ I P KG +R Sbjct: 115 NFDRAMRLNDSEFMGDIKKVIENAGALVIADAWLSGAFASKKNCITSPDTIKGQVIRAAG 174 Query: 181 REMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKA 240 + +L EAGA++ ++PS+EIY MQTG +DAA TSS SF+S+RL E AK LT + A Sbjct: 175 PAFEEMLVEAGASISSMPSSEIYTGMQTGVLDAANTSSASFVSYRLFEQAKCLTAPGENA 234 Query: 241 YWYMFEPLMMSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKVV 300 W+M+EP+++SK VF+ L ++QQ I++ G E + + + D + Y+KAG +VV Sbjct: 235 LWFMYEPVLVSKRVFDGLTEEQQKAILAAGEKAEVYFNEEVRKGDQVMIDTYKKAGVEVV 294 Query: 301 DLNAEVVKKWQDIARNTAWKDFAAR 325 +++ E W ++A+ +++K+FAA Sbjct: 295 EMSKEDYDAWLELAKASSYKNFAAN 319 >SMb20036 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Sme Sinorhizobium meliloti Length = 338 Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 7/263 (2%) Query: 56 FAQQVNEKTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLM 115 FA+ V EK+ G ++ +++PG +L SAL+ G ++M+++ V E + Sbjct: 52 FAELVKEKSGGKIEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDL 111 Query: 116 PGLVTSYQQGAAWKNAEVGKELARILGEKGVVIVSWIWQAG--GVASRGKPIVDPADAKG 173 P L S ++ + G L L G+V V++ W+ G + + P+ D KG Sbjct: 112 PFLFDSGEEADKVMDGPFGTSLMERLPATGLVGVAY-WELGFRNLTNNRHPVTKLEDIKG 170 Query: 174 MKVRGGSREMDLILKEA-GAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKS 232 +K+R + + L A GA V LP E+Y A++TG +D S + ++ + EV K Sbjct: 171 LKIRTIQSPIPVELFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKY 230 Query: 233 LTTGRDKAYWYMFEPLMMSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVY 292 +T R + Y + +++SK ++ L +++ V+ + F K ++ D A + Sbjct: 231 MTLTR---HQYNPQIVLVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEI 287 Query: 293 QKAGAKVVDLNAEVVKKWQDIAR 315 +K G +V +L+AE +K +D + Sbjct: 288 RKTGMEVSELSAEETQKLRDAVK 310 >PM1252 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pmu Pasteurella multocida Length = 328 Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 17/302 (5%) Query: 6 RRHFLGTLAAAPLAAAMPAAWAQTAS-LKISHQFPGGTLTEGDFRDRLVRMFAQQVNEKT 64 +R L LAA A+ A A A+ L+ ++ P D + + F + + EKT Sbjct: 2 KRFNLKMLAALVAGMAVFTASANAATTLRFGYEAP-----RSDTQHEAAKKFNELLKEKT 56 Query: 65 KGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQ 124 KG +K ++P S+L SA+R G +D+ + G VP+ N+ +P + + + Sbjct: 57 KGEIKLSLFPDSTLGNAQTMISAVRGGTIDLEMSGSPNFSGLVPKLNVIDIPFIFQNREH 116 Query: 125 GAAWKNAEVGKELARILGEKGVVIVSWIWQAG--GVASRGKPIVDPADAKGMKVRGGSRE 182 A + E+G+ L + L +G+ +++ W+ G + P+ P D KG+KVR Sbjct: 117 AYAVLDGEIGQGLLKELEAQGLKGLAF-WEVGFRSFTNSKHPVKTPDDIKGLKVRTNQNP 175 Query: 183 MDL-ILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKAY 241 M + GA V +P +E+Y A++T A+DA S +L EV K L+ Sbjct: 176 MYIQAFSILGANPVPMPLSELYTALETRAVDAQEHPVGIVWSAKLYEVQKHLSLTN---- 231 Query: 242 WYMFEPLM--MSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKV 299 + + PL+ M+KA F+ L Q+ I+ + + K ++ + + QKAG +V Sbjct: 232 -HGYTPLIVVMNKAKFDGLSPALQSAILEAAKEAGAYQRKLNLDNEKGIIEKMQKAGIQV 290 Query: 300 VD 301 ++ Sbjct: 291 IE 292 >yiaO [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Eco Escherichia coli K12 Length = 328 Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 12/256 (4%) Query: 54 RMFAQQVNEKTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIG 113 + F + E+TKG LK +++P S+L A S +R G +DM + N G P N+ Sbjct: 45 KKFNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLL 104 Query: 114 LMPGLVTSYQQGAAWKNAEVGKELARILGEKGVVIVSWIWQAG--GVASRGKPIVDPADA 171 +P L + +VG +L L KG+ ++++ W+ G V + P+ PAD Sbjct: 105 DVPFLFRDTAHAHKTLDGKVGDDLKASLEGKGLKVLAY-WENGWRDVTNSRAPVKTPADL 163 Query: 172 KGMKVRGGSREMDL-ILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVA 230 KG+K+R + M++ K GA + +P E+Y ++T +DA S + EV Sbjct: 164 KGLKIRTNNSPMNIAAFKVFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQ 223 Query: 231 KSLTTGRDKAYWYMFEPLM--MSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAV 288 K L+ + + PL+ ++KA F+ L + Q ++S + + K D + Sbjct: 224 KFLSLTH-----HAYSPLLVVINKAKFDGLSPEFQQALVSSAQEAGNYQRKLVAEDQQKI 278 Query: 289 AQVYQKAGAKVV-DLN 303 ++AG +V+ DL+ Sbjct: 279 IDGMKEAGVEVITDLD 294 >STM3673 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Sty Salmonella typhimurium LT2 Length = 328 Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 17/244 (6%) Query: 31 SLKISHQFPGGTLTEGDFRDRLVRMFAQQVNEKTKGALKFEIYPGSSLMKTNAQFSALRK 90 SL+ ++ P + D + + F + + EKT G L +++P S+L A S +R Sbjct: 27 SLRFGYETP-----QTDSQHIAAKKFNELLKEKTNGELTLKLFPDSTLGNAQAMISGVRG 81 Query: 91 GALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQGAAWKNAEVGKELARILGEKGVVIVS 150 G +DM + N G P N+ +P L + +VG EL + L KG+ +++ Sbjct: 82 GTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLA 141 Query: 151 WIWQAG--GVASRGKPIVDPADAKGMKVRGGSREMDL-ILKEAGAAVVTLPSNEIYAAMQ 207 + W+ G V + P+ P D KG+K+R + M++ K GA + +P +E+Y ++ Sbjct: 142 Y-WENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLE 200 Query: 208 TGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKAYWYMFEPLMM--SKAVFERL-PKDQQA 264 T +DA S + EV K L+ + + PL++ +KA F+ L P+ Q+A Sbjct: 201 TRTIDAQEHPINVVWSAKFYEVQKYLSLTH-----HAYSPLLLVINKAKFDALSPQFQEA 255 Query: 265 VIMS 268 ++ S Sbjct: 256 LLSS 259