BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0028.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0568 [E] COG1296 Predicted branched-chain amino acid permease...   152   5e-37
RSc0513 [E] COG1296 Predicted branched-chain amino acid permease...    75   9e-14
PA2039 [E] COG1296 Predicted branched-chain amino acid permease ...    64   2e-10
L54719 [E] COG1296 Predicted branched-chain amino acid permease ...    60   2e-09

>RSc0568 [E] COG1296 Predicted branched-chain amino acid permease
           (azaleucine resistance) Rso Ralstonia solanacearum
          Length = 265

 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 1   MSLLVYAGSAQFAALPLLAAGVPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWY 60
           M+LLVYAGS+Q A LPL+AAG+P+  V  TA IVN+RF+IFSA +  HF HLP+ RRV  
Sbjct: 63  MTLLVYAGSSQLAVLPLMAAGLPVWTVLLTAFIVNVRFIIFSAGLMQHFSHLPFGRRVLI 122

Query: 61  GFFNGDISMAFFPQRYPPSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESW 120
           GFFNGD+    F QRYP     +  GK GY   +    W  WQ+ + +GI+  S  P++W
Sbjct: 123 GFFNGDLPFVLFSQRYPGPGPER--GKEGYLWGMALANWTIWQVSSLLGIVGASLFPDAW 180

Query: 121 NIGFAGTLALIAVMIPMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLA 180
            +  AGTLALI VM+    S   L  V V+  +A++A  LPYRL L++A+V  MAA +  
Sbjct: 181 GLALAGTLALIPVMVSTIRSRATLMAVAVAAVLALVAFKLPYRLSLVIAVVGAMAAGLAG 240

Query: 181 DK 182
           D+
Sbjct: 241 DE 242


>RSc0513 [E] COG1296 Predicted branched-chain amino acid permease
           (azaleucine resistance) Rso Ralstonia solanacearum
          Length = 242

 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 1   MSLLVYAGSAQFAALPLLAAGVPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWY 60
           MS +V+ G++Q   + L A G P L++  T  +VNLR  ++SA++AP   HLP   +   
Sbjct: 47  MSTIVFGGASQMILVQLWAGGAPALMMAATVSMVNLRHALYSASIAPALVHLPRRWKWLI 106

Query: 61  GFFNGDISMAFFPQRYPPST--FHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPE 118
            +   D + A   +R   +     +   +  +F       W +WQ    +G+ LG+++P 
Sbjct: 107 AYLLTDEAFAAMNRRVVNAQPDAQEATHRHWFFLGAGVALWTSWQASTIVGVALGAKVPA 166

Query: 119 SWNIGFAGTLALIAVMIPMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAM 178
           +W + F   L  IA+++P   +   LA  +    +AV     P++LGL+ A   G+A   
Sbjct: 167 TWPLDFFLPLTFIAIVVPSLRTRAQLAAALTGAALAVAWTGWPHKLGLMGAACAGIAVGA 226

Query: 179 LADKLLPGSGSDG 191
           + ++L+ G    G
Sbjct: 227 IVERLVAGGTGKG 239


>PA2039 [E] COG1296 Predicted branched-chain amino acid permease
           (azaleucine resistance) Pae Pseudomonas aeruginosa
          Length = 252

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 1   MSLLVYAGSAQFAALPLLAAGVPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWY 60
           +S +V+AG+AQ  A+ +L  G     + FT +++  + +++  ++ P    LP   R+  
Sbjct: 65  LSAIVFAGAAQLVAIGMLKGGAGFFSIIFTTLLLTSQHLLYGMSLRPVLSPLPGRWRIGL 124

Query: 61  GFFNGDISMAFFPQRYPPSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIP--E 118
           GF   D   A   Q +    F++      Y   +    ++AW L    GILLG  IP  E
Sbjct: 125 GFLLTDEFFALASQ-HDRRNFNR-----WYALGVGLTFYIAWNLFTLAGILLGRSIPGLE 178

Query: 119 SWNIGFAGTLALIAVMIPMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAM 178
              + F+     IA++ P+  ++P L  V  S   +VL     +   L+LA + GMAA  
Sbjct: 179 HLGLDFSIAATFIALVAPLVRNVPTLVCVATSLFCSVLFSHWQWSSALVLAGLAGMAAGF 238

Query: 179 LADKL 183
           + +KL
Sbjct: 239 ICNKL 243


>L54719 [E] COG1296 Predicted branched-chain amino acid permease
           (azaleucine resistance) Lla Lactococcus lactis
          Length = 235

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 13/131 (9%)

Query: 1   MSLLVYAGSAQFAALPLLAAGVPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWY 60
           +SL+VYAGSAQF  + +LA   P++ +  +  +VN R ++ S   A +F++    + +  
Sbjct: 45  LSLIVYAGSAQFIMVSMLATHSPIMSIVLSVFLVNSRIILMSMTTASYFKNESLLKNILL 104

Query: 61  GFFNGDISMAF--FPQRYPPSTFHQPAGKIGY--FAAICYPGWVAWQLGATIGILLGSQI 116
           G    D S A     Q Y         GK+ +  F A     ++ W L + IG LLG+ +
Sbjct: 105 GTLLTDESFALGMNKQNYTE-------GKLNFSWFNASNLLAYLVWALASAIGALLGNLL 157

Query: 117 --PESWNIGFA 125
             PE   +GFA
Sbjct: 158 ANPEKLGLGFA 168