BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0006.p         (215 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0459 [S] COG4395 Uncharacterized protein conserved in bacteri...   176   3e-44
VC1964 [S] COG4395 Uncharacterized protein conserved in bacteria...    80   5e-15
PA5528 [S] COG4395 Uncharacterized protein conserved in bacteria...    72   1e-12

>RSc0459 [S] COG4395 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 356

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 101/125 (80%)

Query: 86  YGIPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAAANQ 145
           +G+PA FDT  F+RNAK YF+RLQAAWD  ++NDIREFTTPEMFAE+++ + +RG   N+
Sbjct: 231 WGVPADFDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDRGTVPNK 290

Query: 146 TDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLA 205
           TDVVS++AE+LG+ET   +YLASV+F G I+E+ +A    FAE+WNL+KP  G GGWVLA
Sbjct: 291 TDVVSVEAELLGIETHPTEYLASVRFSGMIREETSAPAQPFAEVWNLTKPTQGSGGWVLA 350

Query: 206 GIQQL 210
           GIQQL
Sbjct: 351 GIQQL 355


>VC1964 [S] COG4395 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 291

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 5   ILTVALIALAIMFVIRLFR-RKSESAQSAQPAPAWASAAPQAAEPQSSTPQIGSMLKTDQ 63
           IL + LIA  I  ++R F   K  S   +Q  PA++       E     P + +  +  Q
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFE----QPNVHN-FEQPQ 152

Query: 64  SAASTTQNGFGGGFGNA-EAAPAYGIPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIRE 122
           S         GGGFG+A ++   +  PAGFD V FV  A+ ++  LQ AW+   +  IRE
Sbjct: 153 S--------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIRE 204

Query: 123 FTTPEMFAELRLQIQERGAAANQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTAS 182
           + +P +F +L+ + +        TDV+ +DAE++  +   N    S++F G  ++     
Sbjct: 205 YVSPSLFEDLKAE-RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAVEGI 263

Query: 183 PVQFAEIWNLSKP-AAGQGGWVLAGIQ 208
                ++W+L +        W++ GIQ
Sbjct: 264 EENIEDVWHLERDLTVPNAPWLIVGIQ 290


>PA5528 [S] COG4395 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 284

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 23/207 (11%)

Query: 5   ILTVALIALAIMFVIRLF--RRKSESAQSAQPAPAWASAAPQAAEPQSSTPQIGSMLKTD 62
           +L + LIAL      R    RR+    Q  Q  PA A  AP   E  +  P  G      
Sbjct: 98  MLDILLIALVAFIAFRFIAARRR----QQNQGQPAMAGHAPMQREMPAQAPIFG------ 147

Query: 63  QSAASTTQNGFGGGFGNAEAAPAYGIPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIRE 122
                      G     A  +P    P+ F+   FV  A+ +F+ LQ  WD  +++ I E
Sbjct: 148 -----------GAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAE 196

Query: 123 FTTPEMFAELRLQIQERGAAANQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTAS 182
           F TP+M   L+ +  E G A   T + +L  ++ GV+   +  +A++ F G  K      
Sbjct: 197 FVTPQMLQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRFDQ 256

Query: 183 PVQFAEIWNLSKPAAGQGGWVLAGIQQ 209
              F+E W + +       W++AGI+Q
Sbjct: 257 GEAFSESWRMERAQGENQPWLVAGIRQ 283