BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0253.p (228 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0906 [E] COG0287 Prephenate dehydrogenase Rso Ralstonia solan... 243 3e-64 PA3164_1 [E] COG0287 Prephenate dehydrogenase Pae Pseudomonas ae... 171 9e-43 BMEI0079 [E] COG0287 Prephenate dehydrogenase Bme Brucella melit... 167 2e-41 mll3535 [E] COG0287 Prephenate dehydrogenase Mlo Mesorhizobium loti 167 2e-41 NMB0440 [E] COG0287 Prephenate dehydrogenase Nme Neisseria menin... 165 6e-41 >RSc0906 [E] COG0287 Prephenate dehydrogenase Rso Ralstonia solanacearum Length = 298 Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/216 (56%), Positives = 153/216 (70%) Query: 1 VAAPVAQTEAILASIKPHLEARAIVTDAGSTKSDVVAAARKAMGERIAQFVPAHPIAGRE 60 + APVAQT +L +++PHL IVTDAGSTKSDV+ AA+ A+G++++QFVPAHPIAGRE Sbjct: 72 LCAPVAQTLPLLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQFVPAHPIAGRE 131 Query: 61 KHGPEAALAELYEGKKVVITALPENSEADVETVAAAWRACGAIIHRLSPQEHDAVFASVS 120 +G EAALA+LY GKK V+ L EN ADV V A W A GA H +S +HDAVFA+VS Sbjct: 132 LNGVEAALADLYVGKKTVLCPLQENRRADVARVQAMWDAAGAYCHVMSAVQHDAVFAAVS 191 Query: 121 HLPHVLAFALVDDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRDALLTEV 180 HLPHVL++ALV I A +A GFRDFTRIAASSPEMWRDI L+NR+ALL E+ Sbjct: 192 HLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDICLSNREALLREL 251 Query: 181 DAYLVQLQGIRAMIADSDGAGLEKIYASAQHARQQW 216 Y + ++AMIA+ D LE+++ A AR W Sbjct: 252 TTYEAVVGRLKAMIAERDAEALERVFRRASEARLAW 287 >PA3164_1 [E] COG0287 Prephenate dehydrogenase Pae Pseudomonas aeruginosa Length = 319 Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 126/217 (58%) Query: 1 VAAPVAQTEAILASIKPHLEARAIVTDAGSTKSDVVAAARKAMGERIAQFVPAHPIAGRE 60 +A P+ E +LA + +A++TD GS K ++V AAR A G VP HPIAG E Sbjct: 80 LAVPILAMERVLADLAKLDLGKAVLTDVGSAKGNIVRAARVAFGGMPRYLVPGHPIAGSE 139 Query: 61 KHGPEAALAELYEGKKVVITALPENSEADVETVAAAWRACGAIIHRLSPQEHDAVFASVS 120 + G AA A L+ KV++T E + V + WRA GA + + + HD V A+ S Sbjct: 140 QSGVTAAKATLFRRHKVILTPSAETDADALALVDSLWRALGADVEHMEVEHHDEVLAATS 199 Query: 121 HLPHVLAFALVDDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRDALLTEV 180 HLPH+LAF LVD +A + +F+YAA GFRDFTRIA S P MW DI LANR+A+L + Sbjct: 200 HLPHLLAFTLVDSLAKRSENLEIFRYAAGGFRDFTRIAGSDPVMWHDIFLANREAVLRTL 259 Query: 181 DAYLVQLQGIRAMIADSDGAGLEKIYASAQHARQQWA 217 D + L +R + DG L ++ A+ AR+ ++ Sbjct: 260 DVFRDDLDALREAVDTGDGHQLLGVFTRARVAREHFS 296 >BMEI0079 [E] COG0287 Prephenate dehydrogenase Bme Brucella melitensis Length = 321 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 127/213 (59%), Gaps = 5/213 (2%) Query: 1 VAAPVAQTEAILASIKPHLEARAIVTDAGSTKSDVVAAARKAMGERIAQFVPAHPIAGRE 60 V+ PV + + I +L+ AIVTD GSTK+ V+A + + E + F+P HP+AG E Sbjct: 72 VSVPVGSSGTVARQIAGNLKPGAIVTDVGSTKASVIAQMQPELPENM-HFIPGHPLAGTE 130 Query: 61 KHGPEAALAELYEGKKVVITALPENSEADVETVAAAWRACGAIIHRLSPQEHDAVFASVS 120 GP+A AEL+ + ++T LP+ E +E + A W ACG+ + + PQ HD V A VS Sbjct: 131 YSGPDAGFAELFTNRWCILTPLPDTDEKALEKLTAFWTACGSRLDHMDPQHHDLVLAIVS 190 Query: 121 HLPHVLAFALV---DDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRDALL 177 HLPH++A+ +V D+ +E + +Y+ASGFRDFTR+AAS P MWRD+ L N+DA+L Sbjct: 191 HLPHIIAYNIVGTASDLELVTKSEVI-KYSASGFRDFTRLAASDPTMWRDVCLHNKDAIL 249 Query: 178 TEVDAYLVQLQGIRAMIADSDGAGLEKIYASAQ 210 + + L ++ I DG L ++ + Sbjct: 250 EMLGRFSEDLASLQRSIRWGDGEALFDLFTRTR 282 >mll3535 [E] COG0287 Prephenate dehydrogenase Mlo Mesorhizobium loti Length = 311 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 1 VAAPVAQTEAILASIKPHLEARAIVTDAGSTKSDVVAAARKAMGERIAQFVPAHPIAGRE 60 V+ PV + A+ I P L+ AI+TD GSTK+ V+A + + + + F+P HP+AG E Sbjct: 72 VSVPVGSSGAVAEEIAPALKKGAILTDVGSTKASVIAQMQPHVPDGV-HFIPGHPLAGTE 130 Query: 61 KHGPEAALAELYEGKKVVITALPENSEADVETVAAAWRACGAIIHRLSPQEHDAVFASVS 120 K GP+A A+L++ + + T LP +E ++ WR CGA I + PQ HD A VS Sbjct: 131 KSGPDAGFADLFDNRWCIFTPLPGTDPEALERLSEFWRRCGANIDTMDPQHHDMTLAIVS 190 Query: 121 HLPHVLAFALV---DDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRDALL 177 HLPH++A+ +V DD+ + E + +Y+ASGFRDFTR+AAS P MWRD+ L N+DA+L Sbjct: 191 HLPHIIAYNIVGTADDLESVTKTEVI-KYSASGFRDFTRLAASDPTMWRDVCLHNKDAIL 249 Query: 178 TEVDAYLVQLQGIRAMIADSDGAGLEKIYASAQHARQQWAAAIEAAE 224 + + L ++ I DG L ++ + R+ + IEA + Sbjct: 250 EMLARFSEDLAFLQRAIRWGDGDKLFDLFTRTRAVRR---SIIEAGQ 293 >NMB0440 [E] COG0287 Prephenate dehydrogenase Nme Neisseria meningitidis MC58 Length = 290 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 125/216 (57%) Query: 1 VAAPVAQTEAILASIKPHLEARAIVTDAGSTKSDVVAAARKAMGERIAQFVPAHPIAGRE 60 +A PVA AIL +++P L ++D GSTKS V+ A R+ + +R+ + AHPIAG + Sbjct: 71 IATPVATVPAILTALRPVLPEHTWISDVGSTKSSVIEAFRRCLPDRLHHCIAAHPIAGSD 130 Query: 61 KHGPEAALAELYEGKKVVITALPENSEADVETVAAAWRACGAIIHRLSPQEHDAVFASVS 120 + G +AA L+ +K++IT + V W A GA I+ + Q HDAVFA+VS Sbjct: 131 RSGAQAAQFGLFRHRKLIITPHGGEHSDGIALVENLWHAVGAEIYTMDAQRHDAVFAAVS 190 Query: 121 HLPHVLAFALVDDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRDALLTEV 180 H+PH+ AFA V I P + ++AA+GFRDFTRIA+ P +W DI LAN+D+LL V Sbjct: 191 HMPHLTAFAYVHQILDHPDGQEYLKFAATGFRDFTRIASGHPAVWADICLANKDSLLQLV 250 Query: 181 DAYLVQLQGIRAMIADSDGAGLEKIYASAQHARQQW 216 QL + ++ D L + + A+ R +W Sbjct: 251 QGLGKQLDVLANILTTDDREALYRYFEEAKTTRDRW 286