BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0247.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0900 [M] COG2885 Outer membrane protein and related peptidogl...   172   6e-43
RSc2380 [M] COG2885 Outer membrane protein and related peptidogl...   100   2e-21
PA3692 [M] COG2885 Outer membrane protein and related peptidogly...    99   4e-21
ompA [M] COG2885 Outer membrane protein and related peptidoglyca...    97   2e-20
ZompA [M] COG2885 Outer membrane protein and related peptidoglyc...    97   2e-20

>RSc0900 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 218

 Score =  172 bits (435), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 112/166 (67%), Gaps = 15/166 (9%)

Query: 51  LCWQTAY-----VNGPCEEPPAPAPVAAAAPAPAPAPVAAPTSEKVTYAADAFFDFDKAT 105
           LCW+  +      N  C+   APA    A P PA  PV    SEKVT+AADA FDFDKA 
Sbjct: 52  LCWRNGFWTPATANVQCDGALAPAAAPQAQPTPAAKPVVG--SEKVTFAADALFDFDKAV 109

Query: 106 LKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVE 165
           LKP GK+KLD+LV  LK I LEV+IAVGHTDS GS  YN +LSVRRAE+VK YLVSKG+E
Sbjct: 110 LKPEGKSKLDDLVSKLKGITLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVKGYLVSKGIE 169

Query: 166 ANRVYTEGKGKSQPVADNKTAAGRAK--------NRRVEIEVVGTR 203
           ANRVYTEGKGK Q   D K+  G  K        NRRVE+EVVGTR
Sbjct: 170 ANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVEVEVVGTR 215


>RSc2380 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 209

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query: 88  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKL 147
           S K+   +   FD D A +KP+ +  LD +   L          VGHTDS G+  YN  L
Sbjct: 93  SLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTGNPNYNMSL 152

Query: 148 SVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 197
           S RRA+SV +YL  +GV  NR+  EG+G++QPV DN T AGRA+NRRVEI
Sbjct: 153 SQRRAQSVASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEI 202


>PA3692 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 261

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 91  VTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVR 150
           VT+  D  FD DK+ LKP     + +L   L+      +I  G+TDS GS  YNQ+LS R
Sbjct: 139 VTFG-DVLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANYNQRLSER 197

Query: 151 RAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199
           RA+SV+  L+S+G+   RV T G GK  PVA N T++GRA NRRVE+ +
Sbjct: 198 RADSVRMALLSRGISPERVATRGYGKEYPVASNGTSSGRAMNRRVEVTI 246


>ompA [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Eco Escherichia
           coli K12
          Length = 346

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 11/127 (8%)

Query: 88  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLE--VIIAVGHTDSIGSVAYNQ 145
           ++  T  +D  F+F+KATLKP G+A LD+L   L  ++ +   ++ +G+TD IGS AYNQ
Sbjct: 212 TKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQ 271

Query: 146 KLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAK---------NRRVE 196
            LS RRA+SV  YL+SKG+ A+++   G G+S PV  N     + +         +RRVE
Sbjct: 272 GLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331

Query: 197 IEVVGTR 203
           IEV G +
Sbjct: 332 IEVKGIK 338


>ZompA [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins EcZ Escherichia
           coli O157:H7 EDL933
          Length = 346

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 11/127 (8%)

Query: 88  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLE--VIIAVGHTDSIGSVAYNQ 145
           ++  T  +D  F+F+KATLKP G+A LD+L   L  ++ +   ++ +G+TD IGS AYNQ
Sbjct: 212 TKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQ 271

Query: 146 KLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAK---------NRRVE 196
            LS RRA+SV  YL+SKG+ A+++   G G+S PV  N     + +         +RRVE
Sbjct: 272 GLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331

Query: 197 IEVVGTR 203
           IEV G +
Sbjct: 332 IEVKGIK 338