BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0215.p (524 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0809 [R] COG3046 Uncharacterized protein related to deoxyribo... 473 e-133 AGl236 [R] COG3046 Uncharacterized protein related to deoxyribod... 428 e-119 CC0646 Non COG 422 e-117 slr1343 [R] COG3046 Uncharacterized protein related to deoxyribo... 345 1e-94 VNG0705C [R] COG3046 Uncharacterized protein related to deoxyrib... 286 1e-76 >VCA0809 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Vch Vibrio cholerae Length = 516 Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust. Identities = 253/521 (48%), Positives = 330/521 (63%), Gaps = 17/521 (3%) Query: 13 STLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQL 72 S +RLILGDQLN HSWF +V+Y++ E+ E +YV HH QK A FAAM+AF + L Sbjct: 4 SVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFADYL 63 Query: 73 RAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWAQ 132 A GH V ++ LD + L D + + QA ++Q PDE+R+ L+Q + + Sbjct: 64 SAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRL---LEQMANL--R 118 Query: 133 AHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQWN 192 VD+EHFL E+P F K LMEHFYR+MR+RF L+ ADGKPEGGQWN Sbjct: 119 LSGITIGCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWN 178 Query: 193 FDHDNRKRWPG----NPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTE 248 FD DNR + P P + P ++ ++ + S G+ L WP++R + Sbjct: 179 FDADNRNKLKSPDLLQLPTPLCFDNPV--ASIKARIERHRIPSIGQV-GESLLWPINRAQ 235 Query: 249 ALQHLDHFITTVLPHFGDYEDAMSSKAR---RLFHSLLSFALNVKMLHPLEVVRRAEEAW 305 AL L HF LP+FG ++DAM+++ L+HS LSFALN K+L P EV+ A+ Sbjct: 236 ALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAY 295 Query: 306 R--EGKAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRM 363 R +G+ LA VEGF+RQI+GWREYVRG+YWS MP Y RN L + PLP++FW GQT+M Sbjct: 296 RAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKM 355 Query: 364 NCLRHAIGQSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTL 423 CL+ AI QSL+ +AHHIQRLMV GNFALL DP ++ WYLGIYIDA EWVELPNT Sbjct: 356 RCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPNTR 415 Query: 424 GMSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQ 483 GM+ +ADGG+IATKPY +S +YI +MSDYC CAY K K+ ACP N+LYW F L+H+ Sbjct: 416 GMALFADGGLIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHR 475 Query: 484 STFGNNPRMGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 NNPR+GM Y+ KM D QA+ AD SQ+++L Sbjct: 476 DRLANNPRIGMLYKTWDKMTSDSQQAILSTADAYLSQIESL 516 >AGl236 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 507 Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust. Identities = 230/518 (44%), Positives = 305/518 (58%), Gaps = 20/518 (3%) Query: 13 STLRLILGDQLNAQHSWFDHADPEV-VYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQ 71 S L LILGDQL+ + D D + VL EV +E YV HH +KI IF+AMR F E+ Sbjct: 2 SQLVLILGDQLSPSIAALDGVDKKQDTIVLCEVMAEASYVGHHKKKIAFIFSAMRHFAEE 61 Query: 72 LRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWA 131 LR G+RVRY R+DD N S + SR+ P EWRV + D +A Sbjct: 62 LRGEGYRVRYTRIDDADNAGSFTGEVKRAIDDLTPSRICVTEPGEWRVRSEM----DGFA 117 Query: 132 QAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQW 191 A Q + FL++ E GRK ME+FYR+MRR+ LL++ + +P GG+W Sbjct: 118 GAFGIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMRRKTGLLMNGE-QPVGGRW 176 Query: 192 NFDHDNRKRWPGNPPEPRDWRQPHDHGA-------LWEMLQAQGVRSFGEPQATQLRWPL 244 NFD +NR+ P P R H A + + ++ +FG+ + + + Sbjct: 177 NFDAENRQ-----PARPDLLRPKHPVFAPDKITKEVIDTVERLFPDNFGKLE--NFGFAV 229 Query: 245 DRTEALQHLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEA 304 RT+A + L FI L +FG +DAM L HSLLSF +N +L L+V + AE A Sbjct: 230 TRTDAERALSAFIDDFLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDALDVCKAAERA 289 Query: 305 WREGKAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMN 364 + EG APL AVEGFIRQIIGWREY+RGIYW P Y + N + LP ++WTG+T MN Sbjct: 290 YHEGGAPLNAVEGFIRQIIGWREYMRGIYWLAGPDYVDSNFFENDRSLPVFYWTGKTHMN 349 Query: 365 CLRHAIGQSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLG 424 C+ I +++E A+AHHIQRLM+ GNFALLAG+DPK +H WYL +Y DA+EWVELPN +G Sbjct: 350 CMAKVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRWYLEVYADAYEWVELPNVIG 409 Query: 425 MSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQS 484 MSQ+ADGG + TKPY +S YI RMSDYC C YDPK++ +ACPFNALYWDF R++ Sbjct: 410 MSQFADGGFLGTKPYAASGNYINRMSDYCDTCRYDPKERLGDNACPFNALYWDFLARNRE 469 Query: 485 TFGNNPRMGMAYQQIKKMQPDDVQALQQRADDLRSQLD 522 +N R+ Y +M D L+ +A +LD Sbjct: 470 KLKSNHRLAQPYATWARMSEDVRHDLRAKAAAFLRKLD 507 >CC0646 Non COG Length = 509 Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust. Identities = 232/513 (45%), Positives = 315/513 (61%), Gaps = 12/513 (2%) Query: 12 ASTLRLILGDQLNAQHSWFDHADPEVVYVLM-EVRSETDYVLHHAQKILAIFAAMRAFGE 70 A LRL+LGDQL+ S AD VLM E R E HH QK++ +++AMR F E Sbjct: 2 AGALRLVLGDQLSDNLSALVDADLSRDQVLMVESRVEATAWKHHKQKLVLVWSAMRQFAE 61 Query: 71 QLRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTW 130 +LRA G VRY+ L+DP N S+ L RV A +W ++ L Sbjct: 62 RLRARGFNVRYVTLEDPDNTGSIGGELRRALEARAFDRVIRTACGKWGLESHLLSLDLPV 121 Query: 131 AQAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQ 190 + + + FL +R + EGR++ ME FYR+MRR+ LL+D D +P GG+ Sbjct: 122 PMETR------EDDRFLCSRAQFAAWAEGRRELRMEFFYREMRRKTGLLMDGD-QPAGGR 174 Query: 191 WNFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGE--PQATQLRWPLDRTE 248 WNFD +NR++ P P R P + + + Q R F + + WP + E Sbjct: 175 WNFDAENRRKLPPGLRPPERLRIPPNPTT--QTVLEQVSRGFDDHFGEVEGFGWPTNPDE 232 Query: 249 ALQHLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREG 308 A LDHFI +LP FGD++DAMS + L+HSL+S ALN+ +L PL++ RRAE AWREG Sbjct: 233 ATAILDHFIADMLPSFGDWQDAMSWRRPFLWHSLISPALNIGLLDPLDICRRAEAAWREG 292 Query: 309 KAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMNCLRH 368 +APL AVEGFIRQIIGWRE+VRGIYW +MP Y +RNAL + LP ++WTGQT M C+ Sbjct: 293 RAPLNAVEGFIRQIIGWREFVRGIYWLKMPEYAQRNALDAQGKLPGFYWTGQTDMACVAD 352 Query: 369 AIGQSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQW 428 + + + A+AHHIQRLMV GN A+L G+ P + WY+ ++ DA+EWVE+PNT GM+ + Sbjct: 353 TVRAAHDHAYAHHIQRLMVTGNLAMLLGVHPDAVDDWYMVVFADAYEWVEMPNTRGMATF 412 Query: 429 ADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGN 488 ADGGI+ +KPY +S AYI RMSDYC+GC YD K++ DACPFNALYWDF RH Sbjct: 413 ADGGIVGSKPYAASGAYIDRMSDYCKGCRYDVKKRLGDDACPFNALYWDFIDRHAQRLAG 472 Query: 489 NPRMGMAYQQIKKMQPDDVQALQQRADDLRSQL 521 N RM M + ++KM + +A +++A LR ++ Sbjct: 473 NGRMMMPLRTLEKMPDAEREAFRKQARALRVKM 505 >slr1343 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Syn Synechocystis Length = 504 Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 196/505 (38%), Positives = 286/505 (56%), Gaps = 17/505 (3%) Query: 18 ILGDQL-NAQHSWFDHAD--PEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQLRA 74 ILGDQL + Q + H +V +L+E +H QK++ +++AMR F E LRA Sbjct: 7 ILGDQLWSGQTALKSHQGDRSQVPVLLIESAEFARQRPYHRQKLVLVWSAMRHFAEDLRA 66 Query: 75 AGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWAQAH 134 G V Y D + L S ++ AP D+ + W + Sbjct: 67 EGWSVTYEIAAD------FLTPLHHWLKTQGVSHLQVMAPG----DRPFEAWLKSLTLP- 115 Query: 135 QGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQWNFD 194 + ++ + HFL +R + RK+ L+E FYR R+R+++L+ D +P GG+WNFD Sbjct: 116 -CELTLLPNNHFLWSREDFSAWAGDRKRLLLEDFYRAGRKRWQILM-VDDQPVGGRWNFD 173 Query: 195 HDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQHLD 254 DNRK N P+ P D + + + + G Q + +W + R +ALQ L Sbjct: 174 QDNRKPAKKNLSPPKPLSFPPDDITQQVIERIEQLNLPGYGQLSGFQWGVSRQDALQGLK 233 Query: 255 HFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREGKAPLAA 314 +F+ L FG Y+DAM + L+HSL+S LN+ +L PLEV+ A A+ L Sbjct: 234 YFVDVGLSQFGTYQDAMVMGQKTLWHSLISPYLNLGLLTPLEVIEAATNAFATQDISLNN 293 Query: 315 VEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFW-TGQTRMNCLRHAIGQS 373 VEGFIRQ++GWREY++GIY Y + N H PLP ++W + T+MNCL + Q Sbjct: 294 VEGFIRQVLGWREYMQGIYQWVDEDYGQGNWFNHDFPLPEFYWQSSHTKMNCLATVLNQV 353 Query: 374 LETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADGGI 433 ET +AHHIQRLMV+ NFAL+ G++P++L W+ +IDA++WV N LGM Q+ADGGI Sbjct: 354 EETGYAHHIQRLMVLSNFALIVGVNPQKLQDWFHAAFIDAYDWVMQTNVLGMGQFADGGI 413 Query: 434 IATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPRMG 493 +A+KPY SSA YI +MSDYCQ C+Y+ K +T DACPFN YWDF RHQ + RMG Sbjct: 414 LASKPYASSANYINKMSDYCQQCSYNHKARTGKDACPFNYFYWDFLARHQEKLQHTGRMG 473 Query: 494 MAYQQIKKMQPDDVQALQQRADDLR 518 + +K+++P ++ A+Q A++ R Sbjct: 474 LILANLKRIEPTEMSAMQTLAENWR 498 >VNG0705C [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Hbs Halobacterium sp. NRC-1 Length = 503 Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/508 (35%), Positives = 257/508 (50%), Gaps = 19/508 (3%) Query: 18 ILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQLRAAGH 77 +LG+QL DP+ V +L+E + +H QK+ +FAAMR F ++LR G Sbjct: 6 VLGNQLTRTAGPLTD-DPDRV-LLIEAAALARRRRYHPQKLCMVFAAMRHFRDELRDDGV 63 Query: 78 RVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWAQAHQGQ 137 V Y R ++ LDA + + Q P L++ A G Sbjct: 64 DVVYERA------ETFGAGLDAYFDAHPGDDLVVQRPANHGTADRLREL----VAARGGS 113 Query: 138 TAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQWNFDHDN 197 VV + F + + + FYR MRR L+ D PEGG W++D N Sbjct: 114 LRVVANAQFRCSPAQFDDWMGTEPPFKHRPFYRHMRRETGYLMRDDDTPEGGDWSYDDQN 173 Query: 198 RKRWPGNPPEPRDWRQPHD-HGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQHLDHF 256 ++ P P +D H A ++G+P WP+ R +A + L+ F Sbjct: 174 QETPPAEYDSPSVGGFEYDEHVPAVRDWVATEFDTWGDPDG--FDWPVTREQATRALESF 231 Query: 257 ITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWRE-GKAPLAAV 315 + L FG YEDA+ + L HSLLS A+N+ +LHP EV A +A+R PL ++ Sbjct: 232 VADRLAGFGPYEDAVLADDWHLEHSLLSAAVNIGLLHPEEVADAALDAYRSRDDIPLNSI 291 Query: 316 EGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWT-GQTRMNCLRHAIGQSL 374 EGF+RQ+IGWRE++R +Y QMPG N L LP +WT T M CL A G+ Sbjct: 292 EGFVRQLIGWREFMRHVYRHQMPGLATANQLGADRDLPPLYWTPTATDMACLGSAAGRVY 351 Query: 375 ETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADGGII 434 + +AHHI+RLMV+ NFAL G P+ L W+ G ++DA++WV PN +GM + Sbjct: 352 DRGYAHHIERLMVLSNFALTYGARPQALTEWFHGGFVDAYDWVVTPNVVGMGSFGTDAFT 411 Query: 435 ATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPRMGM 494 +KPY SSA YI +M+D+C CA+DP ACPFN+LYWDF H+ T +N RMG+ Sbjct: 412 -SKPYASSANYIDKMTDHCSDCAFDPDSTVGERACPFNSLYWDFLATHEDTLRSNHRMGL 470 Query: 495 AYQQI-KKMQPDDVQALQQRADDLRSQL 521 Y + K + A+++RA +R + Sbjct: 471 VYSHLDSKRDAGKLAAIRERAQRVREGV 498