BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0190.p         (413 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0172_3 [TK] COG2208 Serine phosphatase RsbU, regulator of sigm...   164   5e-40
FN1091 [TK] COG2208 Serine phosphatase RsbU, regulator of sigma ...    73   2e-12
SMb20450_3 [TK] COG2208 Serine phosphatase RsbU, regulator of si...    66   1e-10
CC3094_1 [R] COG0517 FOG Ccr Caulobacter vibrioides                    65   2e-10

>PA0172_3 [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit
           Pae Pseudomonas aeruginosa
          Length = 277

 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 139/270 (51%), Gaps = 13/270 (4%)

Query: 128 RELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWEPRDVVGGDFYHF 187
           RE+ A Q    +++  S+DYAS+IQRA+L   + + T       ++W+PRDVVGGDFY +
Sbjct: 21  REMAAAQ----KKIGDSLDYASLIQRAILPDRQLSATLG-EHHFILWKPRDVVGGDFYVY 75

Query: 188 EPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLMREVNRSMKRVLG 247
                G+   V DC GHGVPGA +T++A +++  A+E  G  DPA ++ E +++M+ +L 
Sbjct: 76  REQADGYLIGVVDCAGHGVPGALMTMLARAAIDHAIEAVGSRDPAAILGETDQAMRSML- 134

Query: 248 QHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEVLTIEGKRVGLGY 307
              Q   P      MDA   W D   R L  + AK+ L+   +DG EV  ++G R  +G 
Sbjct: 135 --SQEQIPQALATNMDAGLVWVDRRRRQLAFAGAKISLY--ASDGEEVQELKGARRAIGD 190

Query: 308 VDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRRTLLEHGSLAMPA 367
               D   + N    LAPG   ++ TDG +DQ GG     FG +R    L +H    +P 
Sbjct: 191 KRRGD---YRNIEVPLAPGWTFYLSTDGFLDQAGGEHGFGFGSRRFADMLRDHARQPLPE 247

Query: 368 LGRVVMDIHGHYQGTQRRRDDICFFGVRLD 397
                +     YQG   +RDDI     R D
Sbjct: 248 QAEAFVATLAEYQGEHPQRDDITILSFRFD 277


>FN1091 [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit
           Fnu Fusobacterium nucleatum
          Length = 447

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 118/273 (43%), Gaps = 16/273 (5%)

Query: 119 GLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWEPRD 178
           G+ A +A+   +   +  +  ++ Q ++ AS IQ+ +L      +     D    + P  
Sbjct: 184 GIQASIAIDNAINYAELLEKERISQELELASSIQKQILPKGFERIKGM--DIATHFSPAK 241

Query: 179 VVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLMREV 238
            VGGD+Y            +AD +G GVP AFL  ++ S LK  +     + PA  +   
Sbjct: 242 EVGGDYYDLSLKNNNLSVTIADVSGKGVPAAFLMALSRSMLK-TINYVSNYTPAEELDLF 300

Query: 239 NRSMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEVLTI 298
           N+ +   + +         ++  +D   F +        SS+   PL +   +   V   
Sbjct: 301 NKIVYPDITE-DMFITVMNAEYNLDTSLFTY--------SSAGHNPLVIYKKENDTVELY 351

Query: 299 EGKRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRRTLL 358
             K V +G++   +D  +  +S +L  G +I   TDG+I+     + + FG QRL   + 
Sbjct: 352 GTKGVAIGFI---EDYNYKENSFELKNGDIIVFYTDGIIECENKNRKL-FGTQRLIDIVY 407

Query: 359 EHGSLAMPALGRVVMDIHGHYQGTQRRRDDICF 391
           ++ +L+   L   +++   +++    + DDI F
Sbjct: 408 KNKTLSAKELKEKILEAIKNFREDYEQTDDITF 440


>SMb20450_3 [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit
           Sme Sinorhizobium meliloti
          Length = 287

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 15/222 (6%)

Query: 176 PRDVVGGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLM 235
           P D VGGD+Y            + D TGHG+    L L+  S + +AL+  G  +PA+ +
Sbjct: 77  PADEVGGDYYDVLQDGKRLKIGIGDVTGHGLESGVLMLMVQS-VARALQEMGEMEPAQFL 135

Query: 236 REVNRSMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEV 295
             VNR++ + L +       + ++  +   F  +D A  TL+    ++   +++ D   V
Sbjct: 136 NRVNRAIYKNLVR-------TRTNKHLSLAFLDYDGARLTLSGQHEEL---IVIRDLERV 185

Query: 296 LTIEGKRVGLGYVDTPDDMQW-DNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRL- 353
             I+   +GL     PD   +          G MI + TDGV +   G   + FG +RL 
Sbjct: 186 ERIDTLDLGLPIGLEPDISAFVATREISFGRGDMIILHTDGVTEAESGTGEL-FGIERLC 244

Query: 354 RRTLLEHGSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVR 395
                 +GS A      ++ D+  H  GTQ+  DDI    +R
Sbjct: 245 ESARCRYGSSAEDVKSGIIEDLMAHI-GTQKIHDDITLVVMR 285


>CC3094_1 [R] COG0517 FOG Ccr Caulobacter vibrioides
          Length = 150

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 24  TVLEIFGQHKELVSLPVVERQ-RPIGLISRHIFMSQMSKPYHRELYERKSCIAFMDKDPL 82
           T+ + F +  + + +PV++   RPIGL+ R+ F  +M+  Y R LY  +     MD++PL
Sbjct: 22  TLYDRFREEPDTLIIPVLDADDRPIGLVERNAFFLRMAAEYGRALYANRPISTLMDREPL 81

Query: 83  IVEADTPIETLGALAVASGDKTLADGFIIVDQGQLAGLGAGLALMRELVAMQEEKNRQVM 142
           +V+A+  +      +++     L  GFI+ + G+  G+G  LAL++       E NR+ +
Sbjct: 82  VVDAEMALADFTTDSLSYRASDLLRGFIVTEAGRYLGVGTVLALLQ----AANETNRRGV 137

Query: 143 QSIDYASV-IQRA 154
           +++  A   ++RA
Sbjct: 138 EALALAKAEVERA 150