BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0175.p         (192 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA1092_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch V...   220   1e-57
RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   219   4e-57
RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   216   3e-56
RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   211   6e-55
YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...   211   8e-55

>VCA1092_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 412

 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 146/185 (78%), Gaps = 5/185 (2%)

Query: 2   AARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 61
           AARGG VVGE +  M AIN AS +I +IISVID IAFQTN+LALNAAVEAARAGEQGRGF
Sbjct: 181 AARGGEVVGEAISAMGAINTASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGF 240

Query: 62  AVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVV 121
           AVVA EVR+LAQRSA AAKEIK LI+DSV KV  G+ LV ++GST+ E+VE+V RV+D++
Sbjct: 241 AVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLI 300

Query: 122 SEISAASTEQSVGIDEINRAVSQMDEVTQQNAALVEQAAAAAXPARGAGIYLPKVQLLRC 181
           ++I+A+S EQS GIDEINRA++ MDE+TQQNA+LVE+ +AA+   +  G      +LL  
Sbjct: 301 AQIAASSVEQSTGIDEINRAIAAMDEMTQQNASLVEETSAASQSLKDEG-----KELLNL 355

Query: 182 MTTLV 186
           M   V
Sbjct: 356 MNFFV 360


>RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 617

 Score =  219 bits (557), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 132/152 (86%)

Query: 1   VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60
           VA RGG VVG+VVQTM  IN++S +I +II VI+ IAFQTNILALNAAVEAARAGEQGRG
Sbjct: 434 VATRGGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRG 493

Query: 61  FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120
           FAVVASEVRSLAQRSA AAKEIK LI DSV +V  GT LV QAG TM+E+VE+VKRVTD+
Sbjct: 494 FAVVASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDI 553

Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152
           + EISAAS EQS GI+++N+AV+QMD+VTQQN
Sbjct: 554 MGEISAASEEQSSGIEQVNQAVNQMDQVTQQN 585


>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score =  216 bits (549), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 141/168 (83%)

Query: 1   VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60
           VAA GG VV +VV  M+ IND S +I +II VIDGIAFQTNILALNAAVEAARAGEQGRG
Sbjct: 332 VAAEGGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 391

Query: 61  FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120
           FAVVA+EVRSLAQRSA+AAKEIK LI  SV +V  GTTLV +AG+TM ++V +++RV+++
Sbjct: 392 FAVVAAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNI 451

Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQNAALVEQAAAAAXPARG 168
           V+EIS+AS EQS G+ ++ +AVSQMDE TQQNAALVEQ+AAAA   +G
Sbjct: 452 VAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQG 499


>RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 600

 Score =  211 bits (538), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 131/152 (86%)

Query: 1   VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60
           +A +GG VVG VV+TM  IND+S +I +II VI+GIAFQTNILALNAAVEAARAGEQGRG
Sbjct: 332 IAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRG 391

Query: 61  FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120
           FAVVA EVRSLAQRSA AAKEIK+LI DSV +V  GTTLV +AG+ + EVV +VKRVTD+
Sbjct: 392 FAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDI 451

Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152
           + EISAAS EQS GI+++N+AV+QMDEVTQQN
Sbjct: 452 MGEISAASDEQSSGIEQVNQAVNQMDEVTQQN 483


>YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 557

 Score =  211 bits (537), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 135/163 (82%)

Query: 1   VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60
            A +GG VV +VVQTM  I  +S +I +I SVIDGIAFQTNILALNAAVEAARAGEQGRG
Sbjct: 336 TAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRG 395

Query: 61  FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120
           FAVVA EVR+LAQRSA AAKEIK LIDDSV++V  G+ LV  AG TM ++V +V RVTD+
Sbjct: 396 FAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDI 455

Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQNAALVEQAAAAA 163
           + EI++AS EQS GID+I +AV++MD VTQQNA+LVE++A+AA
Sbjct: 456 MGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAA 498